Hb_019053_050

Information

Type -
Description -
Location Contig19053: 48416-49861
Sequence    

Annotation

kegg
ID rcu:RCOM_1677360
description ubiquitin-protein ligase, putative
nr
ID XP_002509526.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9LI89
description F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1
trembl
ID B9RBJ2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1677360 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box kelch-repeat protein at3g27150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19004: 49858-50571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019053_050 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_016120_030 0.1019165 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
3 Hb_001335_040 0.1076792222 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004031_060 0.1081978863 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
5 Hb_001091_040 0.1297592438 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
6 Hb_000086_530 0.1392529365 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003371_030 0.1394601834 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
8 Hb_005245_030 0.1421390928 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
9 Hb_002215_020 0.1432579627 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
10 Hb_000959_200 0.1435822098 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
11 Hb_001157_120 0.1478233489 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
12 Hb_004926_010 0.1495103943 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
13 Hb_000139_460 0.1499102707 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
14 Hb_001296_010 0.1504836824 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000243_240 0.1536239366 - - cytochrome P450 family protein [Populus trichocarpa]
16 Hb_000622_140 0.156582099 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000617_300 0.1584038743 - - RALFL33, putative [Ricinus communis]
18 Hb_003528_090 0.1634908827 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
19 Hb_011900_040 0.1653193581 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
20 Hb_000083_260 0.1656752265 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_019053_050 Hb_019053_050 Hb_016120_030 Hb_016120_030 Hb_019053_050--Hb_016120_030 Hb_001335_040 Hb_001335_040 Hb_019053_050--Hb_001335_040 Hb_004031_060 Hb_004031_060 Hb_019053_050--Hb_004031_060 Hb_001091_040 Hb_001091_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_003371_030 Hb_003371_030 Hb_019053_050--Hb_003371_030 Hb_016120_030--Hb_004031_060 Hb_002999_010 Hb_002999_010 Hb_016120_030--Hb_002999_010 Hb_140024_010 Hb_140024_010 Hb_016120_030--Hb_140024_010 Hb_005245_030 Hb_005245_030 Hb_016120_030--Hb_005245_030 Hb_004926_010 Hb_004926_010 Hb_016120_030--Hb_004926_010 Hb_011900_040 Hb_011900_040 Hb_001335_040--Hb_011900_040 Hb_000083_260 Hb_000083_260 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_006889_010 Hb_006889_010 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120 Hb_004031_060--Hb_004926_010 Hb_004031_060--Hb_002999_010 Hb_000480_050 Hb_000480_050 Hb_004031_060--Hb_000480_050 Hb_004031_060--Hb_001091_040 Hb_006351_040 Hb_006351_040 Hb_001091_040--Hb_006351_040 Hb_000139_460 Hb_000139_460 Hb_001091_040--Hb_000139_460 Hb_039946_040 Hb_039946_040 Hb_001091_040--Hb_039946_040 Hb_001091_040--Hb_004926_010 Hb_002020_010 Hb_002020_010 Hb_001091_040--Hb_002020_010 Hb_001856_260 Hb_001856_260 Hb_000086_530--Hb_001856_260 Hb_000237_060 Hb_000237_060 Hb_000086_530--Hb_000237_060 Hb_000327_100 Hb_000327_100 Hb_000086_530--Hb_000327_100 Hb_007237_060 Hb_007237_060 Hb_000086_530--Hb_007237_060 Hb_005144_150 Hb_005144_150 Hb_000086_530--Hb_005144_150 Hb_001616_010 Hb_001616_010 Hb_000086_530--Hb_001616_010 Hb_003371_030--Hb_000139_460 Hb_001006_300 Hb_001006_300 Hb_003371_030--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_003371_030--Hb_003858_070 Hb_019299_020 Hb_019299_020 Hb_003371_030--Hb_019299_020 Hb_001296_010 Hb_001296_010 Hb_003371_030--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_003371_030--Hb_013399_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0924698 0.175576 5.46885 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0325793 0 0.0480853 0.409438 0.267681

CAGE analysis