Hb_000083_260

Information

Type -
Description -
Location Contig83: 308164-309554
Sequence    

Annotation

kegg
ID rcu:RCOM_0883980
description hypothetical protein
nr
ID XP_002522600.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9D1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0883980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59792: 308170-309133 , PASA_asmbl_59793: 308293-308843 , PASA_asmbl_59794: 309470-309700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000012_340 0.0743264578 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
3 Hb_000816_170 0.0923491875 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
4 Hb_003607_040 0.0948900362 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_006889_010 0.0951067912 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
6 Hb_001123_080 0.0971148762 - - conserved hypothetical protein [Ricinus communis]
7 Hb_170597_010 0.1000319057 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
8 Hb_005539_330 0.1024063715 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
9 Hb_006846_050 0.1039451872 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_001232_170 0.1039895493 - - sulfate transporter, putative [Ricinus communis]
11 Hb_001157_120 0.1050873685 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
12 Hb_011900_040 0.1059170529 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
13 Hb_002215_020 0.1061237207 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
14 Hb_002232_340 0.1096753751 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
15 Hb_103942_020 0.1109745705 - - unknown [Zea mays]
16 Hb_006603_010 0.1122610238 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
17 Hb_014881_020 0.1123363934 - - Protein P21, putative [Ricinus communis]
18 Hb_000201_060 0.1125178897 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
19 Hb_116679_010 0.11297931 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
20 Hb_006970_180 0.1134872548 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]

Gene co-expression network

sample Hb_000083_260 Hb_000083_260 Hb_000012_340 Hb_000012_340 Hb_000083_260--Hb_000012_340 Hb_000816_170 Hb_000816_170 Hb_000083_260--Hb_000816_170 Hb_003607_040 Hb_003607_040 Hb_000083_260--Hb_003607_040 Hb_006889_010 Hb_006889_010 Hb_000083_260--Hb_006889_010 Hb_001123_080 Hb_001123_080 Hb_000083_260--Hb_001123_080 Hb_170597_010 Hb_170597_010 Hb_000083_260--Hb_170597_010 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_000012_340--Hb_003607_040 Hb_002186_190 Hb_002186_190 Hb_000012_340--Hb_002186_190 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_003607_040--Hb_000358_070 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_006970_180 Hb_006970_180 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_006889_010--Hb_005539_330 Hb_151436_010 Hb_151436_010 Hb_006889_010--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006889_010--Hb_085158_010 Hb_006603_010 Hb_006603_010 Hb_006889_010--Hb_006603_010 Hb_006018_020 Hb_006018_020 Hb_001123_080--Hb_006018_020 Hb_014881_020 Hb_014881_020 Hb_001123_080--Hb_014881_020 Hb_001123_080--Hb_001232_170 Hb_001123_080--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_001123_080--Hb_000754_010 Hb_170597_010--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_170597_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_170597_010--Hb_011689_090 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_006452_080 Hb_006452_080 Hb_170597_010--Hb_006452_080 Hb_170597_010--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.38883 0.40508 12.427 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.119595 0.0549056 0.530016

CAGE analysis