Hb_001123_080

Information

Type -
Description -
Location Contig1123: 55703-57217
Sequence    

Annotation

kegg
ID rcu:RCOM_1437510
description hypothetical protein
nr
ID XP_002512623.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFD0
description Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2
trembl
ID B9RFV4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437510 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin efflux carrier component 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03727: 55729-57282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006018_020 0.0492577457 - - conserved hypothetical protein [Ricinus communis]
3 Hb_014881_020 0.0569765091 - - Protein P21, putative [Ricinus communis]
4 Hb_001232_170 0.0683775974 - - sulfate transporter, putative [Ricinus communis]
5 Hb_000012_340 0.0705652925 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
6 Hb_000201_060 0.0714023883 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
7 Hb_000754_010 0.0746322927 - - unnamed protein product [Vitis vinifera]
8 Hb_000816_170 0.0802094348 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
9 Hb_000628_070 0.0806912048 - - -
10 Hb_004884_050 0.0883325587 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
11 Hb_004807_070 0.0902768028 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
12 Hb_005396_020 0.0905791812 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
13 Hb_011344_110 0.0911387249 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
14 Hb_003090_250 0.0925504513 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
15 Hb_006061_020 0.0932578961 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
16 Hb_103942_020 0.094547494 - - unknown [Zea mays]
17 Hb_006570_170 0.0951692545 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
18 Hb_000083_260 0.0971148762 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000358_070 0.0983861219 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
20 Hb_012180_070 0.0984106238 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001123_080 Hb_001123_080 Hb_006018_020 Hb_006018_020 Hb_001123_080--Hb_006018_020 Hb_014881_020 Hb_014881_020 Hb_001123_080--Hb_014881_020 Hb_001232_170 Hb_001232_170 Hb_001123_080--Hb_001232_170 Hb_000012_340 Hb_000012_340 Hb_001123_080--Hb_000012_340 Hb_000201_060 Hb_000201_060 Hb_001123_080--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_001123_080--Hb_000754_010 Hb_006018_020--Hb_000754_010 Hb_006018_020--Hb_001232_170 Hb_006018_020--Hb_014881_020 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_011344_110 Hb_011344_110 Hb_006018_020--Hb_011344_110 Hb_014881_020--Hb_011344_110 Hb_014881_020--Hb_000201_060 Hb_000816_170 Hb_000816_170 Hb_014881_020--Hb_000816_170 Hb_014881_020--Hb_001232_170 Hb_001232_170--Hb_000628_070 Hb_001232_170--Hb_000816_170 Hb_001232_170--Hb_011344_110 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_003607_040 Hb_003607_040 Hb_000012_340--Hb_003607_040 Hb_002186_190 Hb_002186_190 Hb_000012_340--Hb_002186_190 Hb_003090_250 Hb_003090_250 Hb_000201_060--Hb_003090_250 Hb_000201_060--Hb_000754_010 Hb_000358_070 Hb_000358_070 Hb_000201_060--Hb_000358_070 Hb_006061_020 Hb_006061_020 Hb_000201_060--Hb_006061_020 Hb_029508_050 Hb_029508_050 Hb_000201_060--Hb_029508_050 Hb_006452_080 Hb_006452_080 Hb_000201_060--Hb_006452_080 Hb_000754_010--Hb_006061_020 Hb_000754_010--Hb_003090_250 Hb_004807_070 Hb_004807_070 Hb_000754_010--Hb_004807_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0201466 1.48378 0.876736 38.9156 0.0377599 0.0652016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0460845 0 0 0 2.08722

CAGE analysis