Hb_003090_250

Information

Type -
Description -
Location Contig3090: 241464-241805
Sequence    

Annotation

kegg
ID tcc:TCM_021822
description Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1
nr
ID XP_007026867.1
description Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EYL9
description Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_021822 PE=4 SV=1
Gene Ontology
ID GO:0008233
description lipid-transfer protein dir1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32651: 241137-241769 , PASA_asmbl_32652: 241783-242017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_250 0.0 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
2 Hb_000201_060 0.0464778588 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
3 Hb_006452_080 0.0574205105 - - Nodulin, putative [Ricinus communis]
4 Hb_000754_010 0.0615135626 - - unnamed protein product [Vitis vinifera]
5 Hb_006061_020 0.0675961232 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
6 Hb_029508_050 0.0786733894 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
7 Hb_000358_070 0.0801463243 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
8 Hb_170597_010 0.0835705121 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
9 Hb_004807_070 0.0843783965 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
10 Hb_001123_080 0.0925504513 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006018_020 0.0925654813 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000527_090 0.0946526045 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_000816_170 0.0948845285 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
14 Hb_116679_010 0.0962674105 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
15 Hb_006275_080 0.0964774107 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
16 Hb_011689_090 0.0990961104 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
17 Hb_003607_040 0.1018665096 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_001232_170 0.1025920157 - - sulfate transporter, putative [Ricinus communis]
19 Hb_000025_150 0.1038112733 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
20 Hb_014881_020 0.1063633369 - - Protein P21, putative [Ricinus communis]

Gene co-expression network

sample Hb_003090_250 Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_003090_250--Hb_000201_060 Hb_006452_080 Hb_006452_080 Hb_003090_250--Hb_006452_080 Hb_000754_010 Hb_000754_010 Hb_003090_250--Hb_000754_010 Hb_006061_020 Hb_006061_020 Hb_003090_250--Hb_006061_020 Hb_029508_050 Hb_029508_050 Hb_003090_250--Hb_029508_050 Hb_000358_070 Hb_000358_070 Hb_003090_250--Hb_000358_070 Hb_000201_060--Hb_000754_010 Hb_000201_060--Hb_000358_070 Hb_000201_060--Hb_006061_020 Hb_000201_060--Hb_029508_050 Hb_000201_060--Hb_006452_080 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_170597_010 Hb_170597_010 Hb_006452_080--Hb_170597_010 Hb_011689_090 Hb_011689_090 Hb_006452_080--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_006452_080--Hb_116679_010 Hb_006018_020 Hb_006018_020 Hb_000754_010--Hb_006018_020 Hb_000754_010--Hb_006061_020 Hb_004807_070 Hb_004807_070 Hb_000754_010--Hb_004807_070 Hb_001123_080 Hb_001123_080 Hb_000754_010--Hb_001123_080 Hb_006061_020--Hb_004807_070 Hb_006061_020--Hb_006018_020 Hb_006061_020--Hb_000358_070 Hb_029508_050--Hb_000358_070 Hb_003607_040 Hb_003607_040 Hb_029508_050--Hb_003607_040 Hb_029508_050--Hb_006452_080 Hb_007472_060 Hb_007472_060 Hb_029508_050--Hb_007472_060 Hb_000816_170 Hb_000816_170 Hb_000358_070--Hb_000816_170 Hb_000358_070--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230501 27.3512 4.8395 337.647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27492 0.216104 0 0 11.4255

CAGE analysis