Hb_000754_010

Information

Type -
Description -
Location Contig754: 9208-18298
Sequence    

Annotation

kegg
ID bdi:100835654
description lactase-phlorizin hydrolase-like
nr
ID CBI24830.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P09848
description Lactase-phlorizin hydrolase OS=Homo sapiens GN=LCT PE=1 SV=3
trembl
ID F6HB85
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01580 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56964: 9254-12113 , PASA_asmbl_56965: 9254-12688 , PASA_asmbl_56966: 15257-15756 , PASA_asmbl_56967: 17020-17642 , PASA_asmbl_56968: 17917-18339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000754_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006018_020 0.050058932 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006061_020 0.0559559134 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
4 Hb_003090_250 0.0615135626 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000201_060 0.0640727071 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
6 Hb_004807_070 0.0700200957 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
7 Hb_001123_080 0.0746322927 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001232_170 0.0784716448 - - sulfate transporter, putative [Ricinus communis]
9 Hb_011930_090 0.0865861848 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
10 Hb_001269_430 0.0889729962 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
11 Hb_170597_010 0.0890834831 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
12 Hb_019299_010 0.0892927754 - - zinc finger protein, putative [Ricinus communis]
13 Hb_006452_080 0.0905301011 - - Nodulin, putative [Ricinus communis]
14 Hb_000087_160 0.0931164596 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_006275_080 0.0933222385 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
16 Hb_000816_170 0.0933538904 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
17 Hb_014881_020 0.0936206177 - - Protein P21, putative [Ricinus communis]
18 Hb_159791_010 0.0941835904 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
19 Hb_000358_070 0.094983306 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
20 Hb_000628_070 0.098640819 - - -

Gene co-expression network

sample Hb_000754_010 Hb_000754_010 Hb_006018_020 Hb_006018_020 Hb_000754_010--Hb_006018_020 Hb_006061_020 Hb_006061_020 Hb_000754_010--Hb_006061_020 Hb_003090_250 Hb_003090_250 Hb_000754_010--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_000754_010--Hb_000201_060 Hb_004807_070 Hb_004807_070 Hb_000754_010--Hb_004807_070 Hb_001123_080 Hb_001123_080 Hb_000754_010--Hb_001123_080 Hb_006018_020--Hb_001123_080 Hb_001232_170 Hb_001232_170 Hb_006018_020--Hb_001232_170 Hb_014881_020 Hb_014881_020 Hb_006018_020--Hb_014881_020 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_011344_110 Hb_011344_110 Hb_006018_020--Hb_011344_110 Hb_006061_020--Hb_000201_060 Hb_006061_020--Hb_003090_250 Hb_006061_020--Hb_004807_070 Hb_006061_020--Hb_006018_020 Hb_000358_070 Hb_000358_070 Hb_006061_020--Hb_000358_070 Hb_003090_250--Hb_000201_060 Hb_006452_080 Hb_006452_080 Hb_003090_250--Hb_006452_080 Hb_029508_050 Hb_029508_050 Hb_003090_250--Hb_029508_050 Hb_003090_250--Hb_000358_070 Hb_000201_060--Hb_000358_070 Hb_000201_060--Hb_029508_050 Hb_000201_060--Hb_006452_080 Hb_001401_110 Hb_001401_110 Hb_004807_070--Hb_001401_110 Hb_001269_430 Hb_001269_430 Hb_004807_070--Hb_001269_430 Hb_004807_070--Hb_000201_060 Hb_004807_070--Hb_006018_020 Hb_001343_060 Hb_001343_060 Hb_004807_070--Hb_001343_060 Hb_001123_080--Hb_014881_020 Hb_001123_080--Hb_001232_170 Hb_000012_340 Hb_000012_340 Hb_001123_080--Hb_000012_340 Hb_001123_080--Hb_000201_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0497265 1.43278 0.418833 18.2838 0.0288232 0.0336825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.856461

CAGE analysis