Hb_006061_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig6061: 11443-12042
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11260g
description POPTRDRAFT_564461; bZIP family protein
nr
ID XP_002311422.1
description bZIP family protein [Populus trichocarpa]
swissprot
ID Q9FMC2
description Basic leucine zipper 43 OS=Arabidopsis thaliana GN=BZIP43 PE=1 SV=1
trembl
ID B9HIW1
description BZIP family protein OS=Populus trichocarpa GN=POPTR_0008s11260g PE=4 SV=1
Gene Ontology
ID GO:0003700
description basic leucine zipper 43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006061_020 0.0 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
2 Hb_000754_010 0.0559559134 - - unnamed protein product [Vitis vinifera]
3 Hb_000201_060 0.0673078591 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
4 Hb_003090_250 0.0675961232 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
5 Hb_004807_070 0.0749587907 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
6 Hb_006018_020 0.0774274643 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000358_070 0.0827804884 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
8 Hb_001232_170 0.0882583494 - - sulfate transporter, putative [Ricinus communis]
9 Hb_001269_430 0.0886406775 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
10 Hb_170597_010 0.0887710446 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
11 Hb_000816_170 0.0892489517 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
12 Hb_006452_080 0.0893305058 - - Nodulin, putative [Ricinus communis]
13 Hb_019299_010 0.0900277692 - - zinc finger protein, putative [Ricinus communis]
14 Hb_011930_090 0.0914248536 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
15 Hb_001123_080 0.0932578961 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000025_150 0.0972044961 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
17 Hb_029508_050 0.1007327909 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
18 Hb_159791_010 0.1011930528 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
19 Hb_000628_070 0.1031535307 - - -
20 Hb_001343_060 0.1035372416 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_006061_020 Hb_006061_020 Hb_000754_010 Hb_000754_010 Hb_006061_020--Hb_000754_010 Hb_000201_060 Hb_000201_060 Hb_006061_020--Hb_000201_060 Hb_003090_250 Hb_003090_250 Hb_006061_020--Hb_003090_250 Hb_004807_070 Hb_004807_070 Hb_006061_020--Hb_004807_070 Hb_006018_020 Hb_006018_020 Hb_006061_020--Hb_006018_020 Hb_000358_070 Hb_000358_070 Hb_006061_020--Hb_000358_070 Hb_000754_010--Hb_006018_020 Hb_000754_010--Hb_003090_250 Hb_000754_010--Hb_000201_060 Hb_000754_010--Hb_004807_070 Hb_001123_080 Hb_001123_080 Hb_000754_010--Hb_001123_080 Hb_000201_060--Hb_003090_250 Hb_000201_060--Hb_000358_070 Hb_029508_050 Hb_029508_050 Hb_000201_060--Hb_029508_050 Hb_006452_080 Hb_006452_080 Hb_000201_060--Hb_006452_080 Hb_003090_250--Hb_006452_080 Hb_003090_250--Hb_029508_050 Hb_003090_250--Hb_000358_070 Hb_001401_110 Hb_001401_110 Hb_004807_070--Hb_001401_110 Hb_001269_430 Hb_001269_430 Hb_004807_070--Hb_001269_430 Hb_004807_070--Hb_000201_060 Hb_004807_070--Hb_006018_020 Hb_001343_060 Hb_001343_060 Hb_004807_070--Hb_001343_060 Hb_006018_020--Hb_001123_080 Hb_001232_170 Hb_001232_170 Hb_006018_020--Hb_001232_170 Hb_014881_020 Hb_014881_020 Hb_006018_020--Hb_014881_020 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_011344_110 Hb_011344_110 Hb_006018_020--Hb_011344_110 Hb_000816_170 Hb_000816_170 Hb_000358_070--Hb_000816_170 Hb_000358_070--Hb_029508_050 Hb_003607_040 Hb_003607_040 Hb_000358_070--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.68456 0.612844 30.6809 0 0.168096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0325444 1.38219

CAGE analysis