Hb_003607_040

Information

Type -
Description -
Location Contig3607: 75038-78559
Sequence    

Annotation

kegg
ID rcu:RCOM_1721670
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_002521135.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID C0LGV1
description LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1
trembl
ID B9S566
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_1721670 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase rch1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_040 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_002215_020 0.0573676629 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
3 Hb_116679_010 0.0626233924 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
4 Hb_000012_340 0.0711198723 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
5 Hb_000358_070 0.0713160621 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
6 Hb_000816_170 0.0735652087 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
7 Hb_029508_050 0.0741263779 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
8 Hb_103942_020 0.0741266492 - - unknown [Zea mays]
9 Hb_007441_320 0.0744755039 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
10 Hb_011689_090 0.0750369689 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
11 Hb_170597_010 0.0834674015 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
12 Hb_001454_030 0.0838488537 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
13 Hb_000201_060 0.0886767086 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
14 Hb_006452_080 0.0889962677 - - Nodulin, putative [Ricinus communis]
15 Hb_007472_060 0.0923452501 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
16 Hb_000083_260 0.0948900362 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006275_080 0.0967368479 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
18 Hb_001804_020 0.0981306622 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
19 Hb_005183_090 0.1000836431 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
20 Hb_001123_080 0.1011651039 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003607_040 Hb_003607_040 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_002215_020--Hb_000012_340 Hb_103942_020 Hb_103942_020 Hb_002215_020--Hb_103942_020 Hb_002186_190 Hb_002186_190 Hb_002215_020--Hb_002186_190 Hb_001454_030 Hb_001454_030 Hb_002215_020--Hb_001454_030 Hb_002215_020--Hb_000816_170 Hb_011689_090 Hb_011689_090 Hb_116679_010--Hb_011689_090 Hb_170597_010 Hb_170597_010 Hb_116679_010--Hb_170597_010 Hb_006275_080 Hb_006275_080 Hb_116679_010--Hb_006275_080 Hb_006452_080 Hb_006452_080 Hb_116679_010--Hb_006452_080 Hb_000027_010 Hb_000027_010 Hb_116679_010--Hb_000027_010 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_000012_340--Hb_002186_190 Hb_000358_070--Hb_000816_170 Hb_000358_070--Hb_029508_050 Hb_000201_060 Hb_000201_060 Hb_000358_070--Hb_000201_060 Hb_003090_250 Hb_003090_250 Hb_000358_070--Hb_003090_250 Hb_006061_020 Hb_006061_020 Hb_000358_070--Hb_006061_020 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000816_170--Hb_000201_060 Hb_029508_050--Hb_000201_060 Hb_029508_050--Hb_006452_080 Hb_029508_050--Hb_003090_250 Hb_007472_060 Hb_007472_060 Hb_029508_050--Hb_007472_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0338211 0.0129752 0.891109 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00785339 0.0211867

CAGE analysis