Hb_011689_090

Information

Type -
Description -
Location Contig11689: 75459-76019
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02840g
description POPTRDRAFT_565691; hypothetical protein
nr
ID XP_012069457.1
description PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02056 PE=4 SV=1
Gene Ontology
ID GO:0005783
description duf679 domain membrane protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 038_I24.ab1: 75356-76111

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_090 0.0 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
2 Hb_116679_010 0.0323324629 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
3 Hb_006275_080 0.0451462386 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
4 Hb_170597_010 0.0619642989 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_006452_080 0.0699501337 - - Nodulin, putative [Ricinus communis]
6 Hb_003607_040 0.0750369689 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_000027_010 0.0768943087 - - -
8 Hb_001104_290 0.0808261277 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
9 Hb_007472_060 0.080838713 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
10 Hb_000363_100 0.0826251172 - - -
11 Hb_000527_090 0.0839992179 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_007441_320 0.086104658 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
13 Hb_003747_080 0.0885495099 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_000203_110 0.0933185892 - - -
15 Hb_003252_030 0.0978390959 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_103942_020 0.0986076743 - - unknown [Zea mays]
17 Hb_003090_250 0.0990961104 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
18 Hb_181191_010 0.0993629646 - - kinase, putative [Ricinus communis]
19 Hb_000710_130 0.1015117951 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_137821_010 0.1023303039 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]

Gene co-expression network

sample Hb_011689_090 Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_011689_090--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_011689_090--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_011689_090--Hb_170597_010 Hb_006452_080 Hb_006452_080 Hb_011689_090--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_011689_090--Hb_003607_040 Hb_000027_010 Hb_000027_010 Hb_011689_090--Hb_000027_010 Hb_116679_010--Hb_170597_010 Hb_116679_010--Hb_006275_080 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_006452_080 Hb_116679_010--Hb_000027_010 Hb_006275_080--Hb_170597_010 Hb_006275_080--Hb_000027_010 Hb_006275_080--Hb_006452_080 Hb_000710_130 Hb_000710_130 Hb_006275_080--Hb_000710_130 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_170597_010--Hb_006452_080 Hb_170597_010--Hb_003607_040 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_000027_010--Hb_000710_130 Hb_000186_090 Hb_000186_090 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157117 25.4952 10.7899 413.639 0.0934669 0.153343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111782 0 0 2.5325 4.03328

CAGE analysis