Hb_000816_170

Information

Type transcription factor
Description TF Family: LOB
Location Contig816: 189200-190370
Sequence    

Annotation

kegg
ID rcu:RCOM_0689060
description LOB domain-containing protein, putative
nr
ID XP_012091188.1
description PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
swissprot
ID Q8L5T5
description LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2
trembl
ID A0A067JNV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03351 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lob domain-containing protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59417: 189185-190009 , PASA_asmbl_59418: 190470-190621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_170 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
2 Hb_000358_070 0.0515634111 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
3 Hb_000012_340 0.0673104958 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
4 Hb_001232_170 0.0680317772 - - sulfate transporter, putative [Ricinus communis]
5 Hb_000243_240 0.0687788415 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_001343_060 0.0693132653 - - Cytochrome P450 [Theobroma cacao]
7 Hb_000201_060 0.0699330854 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
8 Hb_014881_020 0.0716294094 - - Protein P21, putative [Ricinus communis]
9 Hb_003607_040 0.0735652087 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_001141_430 0.073658675 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
11 Hb_001157_120 0.0740656847 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
12 Hb_011344_110 0.076227826 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
13 Hb_159791_010 0.0765488126 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
14 Hb_001123_080 0.0802094348 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004807_070 0.0837263226 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
16 Hb_006018_020 0.0848477437 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006061_020 0.0892489517 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
18 Hb_000628_070 0.0893317345 - - -
19 Hb_000244_290 0.0907144815 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
20 Hb_029508_050 0.0922779293 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_000816_170 Hb_000816_170 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_000012_340 Hb_000012_340 Hb_000816_170--Hb_000012_340 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_029508_050 Hb_029508_050 Hb_000358_070--Hb_029508_050 Hb_000358_070--Hb_000201_060 Hb_003607_040 Hb_003607_040 Hb_000358_070--Hb_003607_040 Hb_003090_250 Hb_003090_250 Hb_000358_070--Hb_003090_250 Hb_006061_020 Hb_006061_020 Hb_000358_070--Hb_006061_020 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_000012_340--Hb_003607_040 Hb_002186_190 Hb_002186_190 Hb_000012_340--Hb_002186_190 Hb_000628_070 Hb_000628_070 Hb_001232_170--Hb_000628_070 Hb_006018_020 Hb_006018_020 Hb_001232_170--Hb_006018_020 Hb_011344_110 Hb_011344_110 Hb_001232_170--Hb_011344_110 Hb_001232_170--Hb_001123_080 Hb_014881_020 Hb_014881_020 Hb_001232_170--Hb_014881_020 Hb_001157_120 Hb_001157_120 Hb_000243_240--Hb_001157_120 Hb_000244_290 Hb_000244_290 Hb_000243_240--Hb_000244_290 Hb_001141_430 Hb_001141_430 Hb_000243_240--Hb_001141_430 Hb_000243_240--Hb_001343_060 Hb_000243_240--Hb_011344_110 Hb_001343_060--Hb_001141_430 Hb_159791_010 Hb_159791_010 Hb_001343_060--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_001343_060--Hb_004757_010 Hb_001343_060--Hb_011344_110 Hb_001269_430 Hb_001269_430 Hb_001343_060--Hb_001269_430 Hb_000201_060--Hb_003090_250 Hb_000754_010 Hb_000754_010 Hb_000201_060--Hb_000754_010 Hb_000201_060--Hb_006061_020 Hb_000201_060--Hb_029508_050 Hb_006452_080 Hb_006452_080 Hb_000201_060--Hb_006452_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.679901 0.228559 13.2982 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108398 0.786036

CAGE analysis