Hb_001141_430

Information

Type -
Description -
Location Contig1141: 314756-315844
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15160g
description hypothetical protein
nr
ID XP_006379825.1
description hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G853
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15160g PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase yrzf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04288: 314742-315646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_430 0.0 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
2 Hb_001343_060 0.0447586072 - - Cytochrome P450 [Theobroma cacao]
3 Hb_159791_010 0.0549166616 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
4 Hb_004757_010 0.0612768683 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
5 Hb_011344_110 0.0718088441 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
6 Hb_000816_170 0.073658675 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
7 Hb_001712_010 0.0739123671 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
8 Hb_000243_240 0.0743948433 - - cytochrome P450 family protein [Populus trichocarpa]
9 Hb_001232_170 0.0803563329 - - sulfate transporter, putative [Ricinus communis]
10 Hb_000959_170 0.0805147078 - - Cell division protein kinase 7, putative [Ricinus communis]
11 Hb_000244_290 0.0806823844 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
12 Hb_001157_120 0.0811125171 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_000628_070 0.0817023851 - - -
14 Hb_004807_070 0.0833893695 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
15 Hb_001269_430 0.0838068079 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
16 Hb_027411_030 0.085539706 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_000087_160 0.0927727134 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_145975_010 0.0930461743 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001401_110 0.0963243215 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
20 Hb_000291_240 0.1022107781 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]

Gene co-expression network

sample Hb_001141_430 Hb_001141_430 Hb_001343_060 Hb_001343_060 Hb_001141_430--Hb_001343_060 Hb_159791_010 Hb_159791_010 Hb_001141_430--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_001141_430--Hb_004757_010 Hb_011344_110 Hb_011344_110 Hb_001141_430--Hb_011344_110 Hb_000816_170 Hb_000816_170 Hb_001141_430--Hb_000816_170 Hb_001712_010 Hb_001712_010 Hb_001141_430--Hb_001712_010 Hb_001343_060--Hb_159791_010 Hb_001343_060--Hb_004757_010 Hb_001343_060--Hb_011344_110 Hb_001269_430 Hb_001269_430 Hb_001343_060--Hb_001269_430 Hb_001343_060--Hb_000816_170 Hb_159791_010--Hb_004757_010 Hb_000959_170 Hb_000959_170 Hb_159791_010--Hb_000959_170 Hb_159791_010--Hb_000816_170 Hb_000087_160 Hb_000087_160 Hb_159791_010--Hb_000087_160 Hb_011344_050 Hb_011344_050 Hb_004757_010--Hb_011344_050 Hb_027411_030 Hb_027411_030 Hb_004757_010--Hb_027411_030 Hb_004757_010--Hb_001712_010 Hb_000244_290 Hb_000244_290 Hb_011344_110--Hb_000244_290 Hb_000628_070 Hb_000628_070 Hb_011344_110--Hb_000628_070 Hb_014881_020 Hb_014881_020 Hb_011344_110--Hb_014881_020 Hb_001232_170 Hb_001232_170 Hb_011344_110--Hb_001232_170 Hb_006018_020 Hb_006018_020 Hb_011344_110--Hb_006018_020 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_000012_340 Hb_000012_340 Hb_000816_170--Hb_000012_340 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_092272_010 Hb_092272_010 Hb_001712_010--Hb_092272_010 Hb_001712_010--Hb_000628_070 Hb_001712_010--Hb_001343_060 Hb_001712_010--Hb_011344_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0676593 2.94201 1.24094 39.1962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.525829 3.65063

CAGE analysis