Hb_000087_160

Information

Type -
Description -
Location Contig87: 287771-291319
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14180g
description POPTRDRAFT_769713; hypothetical protein
nr
ID AIU41651.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q7XA72
description ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2
trembl
ID A0A097P9T3
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG21 PE=2 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_160 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000959_170 0.0727991495 - - Cell division protein kinase 7, putative [Ricinus communis]
3 Hb_159791_010 0.0766154128 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
4 Hb_011930_090 0.0773576477 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
5 Hb_187906_010 0.0788830024 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
6 Hb_019299_010 0.0815262757 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000230_220 0.0894375304 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000152_630 0.0905703125 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
9 Hb_004807_070 0.090928132 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
10 Hb_001401_110 0.0913735061 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
11 Hb_001712_010 0.0919839847 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
12 Hb_001232_170 0.0922942082 - - sulfate transporter, putative [Ricinus communis]
13 Hb_001141_430 0.0927727134 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
14 Hb_000628_070 0.0930295694 - - -
15 Hb_000754_010 0.0931164596 - - unnamed protein product [Vitis vinifera]
16 Hb_000188_140 0.0937825344 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
17 Hb_000920_120 0.0939421051 - - -
18 Hb_025557_090 0.0948275096 - - hypothetical protein glysoja_034865 [Glycine soja]
19 Hb_000438_180 0.0961849685 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_012217_010 0.0970053166 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]

Gene co-expression network

sample Hb_000087_160 Hb_000087_160 Hb_000959_170 Hb_000959_170 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_011930_090 Hb_011930_090 Hb_000087_160--Hb_011930_090 Hb_187906_010 Hb_187906_010 Hb_000087_160--Hb_187906_010 Hb_019299_010 Hb_019299_010 Hb_000087_160--Hb_019299_010 Hb_000230_220 Hb_000230_220 Hb_000087_160--Hb_000230_220 Hb_000959_170--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_000959_170--Hb_004757_010 Hb_001141_430 Hb_001141_430 Hb_000959_170--Hb_001141_430 Hb_000959_170--Hb_187906_010 Hb_025557_090 Hb_025557_090 Hb_000959_170--Hb_025557_090 Hb_159791_010--Hb_001141_430 Hb_159791_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_159791_010--Hb_001343_060 Hb_000816_170 Hb_000816_170 Hb_159791_010--Hb_000816_170 Hb_011930_090--Hb_019299_010 Hb_012217_010 Hb_012217_010 Hb_011930_090--Hb_012217_010 Hb_001269_430 Hb_001269_430 Hb_011930_090--Hb_001269_430 Hb_009851_120 Hb_009851_120 Hb_011930_090--Hb_009851_120 Hb_000438_180 Hb_000438_180 Hb_011930_090--Hb_000438_180 Hb_001401_110 Hb_001401_110 Hb_187906_010--Hb_001401_110 Hb_187906_010--Hb_000438_180 Hb_187906_010--Hb_019299_010 Hb_187906_010--Hb_009851_120 Hb_019299_010--Hb_009851_120 Hb_019299_010--Hb_012217_010 Hb_019299_010--Hb_001401_110 Hb_003197_050 Hb_003197_050 Hb_000230_220--Hb_003197_050 Hb_000152_630 Hb_000152_630 Hb_000230_220--Hb_000152_630 Hb_116349_080 Hb_116349_080 Hb_000230_220--Hb_116349_080 Hb_000188_140 Hb_000188_140 Hb_000230_220--Hb_000188_140 Hb_000155_030 Hb_000155_030 Hb_000230_220--Hb_000155_030 Hb_000230_220--Hb_025557_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200646 0.607947 0.434588 7.04552 0.00810899 0.00708152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.018387 0 0 0.017241 0.491648

CAGE analysis