Hb_187906_010

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig187906: 357-2406
Sequence    

Annotation

kegg
ID rcu:RCOM_0801600
description hypothetical protein
nr
ID XP_011010889.1
description PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
swissprot
ID O24408
description Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=1 SV=2
trembl
ID B9RS11
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0801600 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18535: 1849-2397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187906_010 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
2 Hb_001401_110 0.0663360485 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
3 Hb_000438_180 0.0717527743 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_000087_160 0.0788830024 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_019299_010 0.0796661567 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000959_170 0.0843082566 - - Cell division protein kinase 7, putative [Ricinus communis]
7 Hb_009851_120 0.0893608605 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
8 Hb_032299_020 0.0897002746 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_000999_060 0.0918866502 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
10 Hb_000230_220 0.0921631221 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004807_070 0.0923571754 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
12 Hb_180293_010 0.0946166772 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
13 Hb_092272_010 0.096463225 - - -
14 Hb_011930_090 0.0977094199 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
15 Hb_000025_150 0.1009149588 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
16 Hb_025557_090 0.1009425304 - - hypothetical protein glysoja_034865 [Glycine soja]
17 Hb_001584_250 0.1013221689 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_000429_080 0.1049210628 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000188_140 0.1065417332 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
20 Hb_000152_630 0.1099782203 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_187906_010 Hb_187906_010 Hb_001401_110 Hb_001401_110 Hb_187906_010--Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_187906_010--Hb_000438_180 Hb_000087_160 Hb_000087_160 Hb_187906_010--Hb_000087_160 Hb_019299_010 Hb_019299_010 Hb_187906_010--Hb_019299_010 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_009851_120 Hb_009851_120 Hb_187906_010--Hb_009851_120 Hb_001401_110--Hb_000438_180 Hb_004807_070 Hb_004807_070 Hb_001401_110--Hb_004807_070 Hb_001269_430 Hb_001269_430 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_011930_090 Hb_011930_090 Hb_000087_160--Hb_011930_090 Hb_000087_160--Hb_019299_010 Hb_000230_220 Hb_000230_220 Hb_000087_160--Hb_000230_220 Hb_019299_010--Hb_011930_090 Hb_019299_010--Hb_009851_120 Hb_012217_010 Hb_012217_010 Hb_019299_010--Hb_012217_010 Hb_019299_010--Hb_001401_110 Hb_000959_170--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_000959_170--Hb_004757_010 Hb_001141_430 Hb_001141_430 Hb_000959_170--Hb_001141_430 Hb_025557_090 Hb_025557_090 Hb_000959_170--Hb_025557_090 Hb_000999_060 Hb_000999_060 Hb_009851_120--Hb_000999_060 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_009851_120--Hb_011930_090 Hb_001584_250 Hb_001584_250 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.40413 0.836618 11.2191 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.788552

CAGE analysis