Hb_021443_010

Information

Type -
Description -
Location Contig21443: 6875-10259
Sequence    

Annotation

kegg
ID cit:102624179
description cleavage and polyadenylation specificity factor subunit 1-like
nr
ID XP_012090388.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
swissprot
ID Q9FGR0
description Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
trembl
ID A0A067JEX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26213 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cleavage and polyadenylation specificity factor subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_010 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
2 Hb_003711_050 0.0487909812 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_000438_180 0.0779406306 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_032260_040 0.0859955179 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001584_250 0.0948911604 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_001401_110 0.0953648537 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
7 Hb_000201_050 0.1017698035 - - -
8 Hb_000007_020 0.1040407751 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
9 Hb_000853_140 0.1075306344 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
10 Hb_024066_030 0.1107622043 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
11 Hb_001269_430 0.1138205545 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
12 Hb_000349_280 0.1138715796 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000422_060 0.114208031 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
14 Hb_000025_150 0.1192184719 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
15 Hb_008406_170 0.1218506757 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_032299_020 0.1243658879 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_027746_030 0.1243764287 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000953_110 0.1245943563 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
19 Hb_007545_220 0.1278374382 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
20 Hb_012217_010 0.128608762 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]

Gene co-expression network

sample Hb_021443_010 Hb_021443_010 Hb_003711_050 Hb_003711_050 Hb_021443_010--Hb_003711_050 Hb_000438_180 Hb_000438_180 Hb_021443_010--Hb_000438_180 Hb_032260_040 Hb_032260_040 Hb_021443_010--Hb_032260_040 Hb_001584_250 Hb_001584_250 Hb_021443_010--Hb_001584_250 Hb_001401_110 Hb_001401_110 Hb_021443_010--Hb_001401_110 Hb_000201_050 Hb_000201_050 Hb_021443_010--Hb_000201_050 Hb_003711_050--Hb_032260_040 Hb_003711_050--Hb_000438_180 Hb_003711_050--Hb_000201_050 Hb_003711_050--Hb_001584_250 Hb_000853_140 Hb_000853_140 Hb_003711_050--Hb_000853_140 Hb_000438_180--Hb_001401_110 Hb_187906_010 Hb_187906_010 Hb_000438_180--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_000438_180--Hb_001269_430 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_012217_010 Hb_012217_010 Hb_032260_040--Hb_012217_010 Hb_008406_170 Hb_008406_170 Hb_032260_040--Hb_008406_170 Hb_032260_040--Hb_000201_050 Hb_032260_040--Hb_000853_140 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_000429_080 Hb_000429_080 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_001584_250--Hb_000201_050 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_004807_070 Hb_004807_070 Hb_001401_110--Hb_004807_070 Hb_001401_110--Hb_187906_010 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_001502_010 Hb_001502_010 Hb_000201_050--Hb_001502_010 Hb_027746_030 Hb_027746_030 Hb_000201_050--Hb_027746_030 Hb_000422_060 Hb_000422_060 Hb_000201_050--Hb_000422_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.173062 0.0205718 0.763886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0946319

CAGE analysis