Hb_032299_020

Information

Type -
Description -
Location Contig32299: 11560-12711
Sequence    

Annotation

kegg
ID rcu:RCOM_0788390
description tonoplast intrinsic protein, putative
nr
ID XP_002531118.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID P25818
description Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
trembl
ID B9SYP9
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_0788390 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin tip1-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34236: 11718-12884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032299_020 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_001584_250 0.069586983 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_000422_060 0.0706015057 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
4 Hb_000429_080 0.0773613324 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000438_180 0.0848749242 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_187906_010 0.0897002746 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
7 Hb_012217_010 0.0976120428 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
8 Hb_000201_050 0.1027131999 - - -
9 Hb_002186_170 0.1069552388 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
10 Hb_001502_010 0.1079581552 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
11 Hb_003711_050 0.1082003514 - - Isoflavone reductase, putative [Ricinus communis]
12 Hb_007441_100 0.1092991143 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
13 Hb_029508_040 0.1094487344 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
14 Hb_011930_090 0.1098924123 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
15 Hb_009851_120 0.1104847071 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
16 Hb_000087_160 0.1105253181 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_002053_020 0.1114982501 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_002025_190 0.1115824389 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
19 Hb_074100_010 0.1133094331 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
20 Hb_000098_230 0.1133338287 - - Potassium channel AKT2/3, putative [Ricinus communis]

Gene co-expression network

sample Hb_032299_020 Hb_032299_020 Hb_001584_250 Hb_001584_250 Hb_032299_020--Hb_001584_250 Hb_000422_060 Hb_000422_060 Hb_032299_020--Hb_000422_060 Hb_000429_080 Hb_000429_080 Hb_032299_020--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_032299_020--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_032299_020--Hb_187906_010 Hb_012217_010 Hb_012217_010 Hb_032299_020--Hb_012217_010 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_007919_010 Hb_007919_010 Hb_000422_060--Hb_007919_010 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_000098_230 Hb_000098_230 Hb_000422_060--Hb_000098_230 Hb_002186_170 Hb_002186_170 Hb_000422_060--Hb_002186_170 Hb_000422_060--Hb_001584_250 Hb_000429_080--Hb_009851_120 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060 Hb_001401_110 Hb_001401_110 Hb_000438_180--Hb_001401_110 Hb_000438_180--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_187906_010--Hb_001401_110 Hb_000087_160 Hb_000087_160 Hb_187906_010--Hb_000087_160 Hb_019299_010 Hb_019299_010 Hb_187906_010--Hb_019299_010 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_187906_010--Hb_009851_120 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_012217_010--Hb_019299_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122574 7.70182 3.12885 39.7215 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0748067 0 0 0.286478 2.92763

CAGE analysis