Hb_007441_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig7441: 55815-59369
Sequence    

Annotation

kegg
ID tcc:TCM_005744
description WRKY family transcription factor
nr
ID XP_011017378.1
description PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
swissprot
ID Q93WY4
description Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1
trembl
ID A0A061DUM5
description WRKY family transcription factor OS=Theobroma cacao GN=TCM_005744 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_100 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
2 Hb_012217_010 0.0693485125 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
3 Hb_000847_110 0.0830103031 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000378_030 0.0836303833 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000098_230 0.0879070189 - - Potassium channel AKT2/3, putative [Ricinus communis]
6 Hb_001418_050 0.0912243007 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
7 Hb_001541_170 0.0930429413 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
8 Hb_032260_040 0.1018645678 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000349_280 0.1029394607 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006618_100 0.1035916002 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
11 Hb_000201_050 0.1053292172 - - -
12 Hb_011930_090 0.1070417054 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
13 Hb_003711_050 0.1080886912 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_032299_020 0.1092991143 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_000422_060 0.1095056617 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
16 Hb_000920_120 0.1104021495 - - -
17 Hb_000438_180 0.1106045989 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_001579_160 0.1149511806 - - PREDICTED: kininogen-1-like [Jatropha curcas]
19 Hb_004757_010 0.1170324625 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
20 Hb_000206_270 0.1193115643 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007441_100 Hb_007441_100 Hb_012217_010 Hb_012217_010 Hb_007441_100--Hb_012217_010 Hb_000847_110 Hb_000847_110 Hb_007441_100--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_007441_100--Hb_000378_030 Hb_000098_230 Hb_000098_230 Hb_007441_100--Hb_000098_230 Hb_001418_050 Hb_001418_050 Hb_007441_100--Hb_001418_050 Hb_001541_170 Hb_001541_170 Hb_007441_100--Hb_001541_170 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_012217_010--Hb_000847_110 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_000847_110--Hb_001541_170 Hb_000847_110--Hb_001418_050 Hb_000847_110--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_000847_110--Hb_000087_190 Hb_000378_030--Hb_001418_050 Hb_000378_030--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_000378_030--Hb_000422_060 Hb_032299_020 Hb_032299_020 Hb_000378_030--Hb_032299_020 Hb_011314_010 Hb_011314_010 Hb_000378_030--Hb_011314_010 Hb_000098_230--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_000098_230--Hb_001418_050 Hb_000098_230--Hb_000422_060 Hb_001418_050--Hb_001541_170 Hb_001500_020 Hb_001500_020 Hb_001418_050--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254118 2.47068 0.8896 14.9886 0.0380829 0.108237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.15105 1.87242

CAGE analysis