Hb_000847_110

Information

Type -
Description -
Location Contig847: 144658-145278
Sequence    

Annotation

kegg
ID rcu:RCOM_1626720
description hypothetical protein
nr
ID XP_002527253.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1626720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60259: 144592-145244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012217_010 0.0822499026 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
3 Hb_007441_100 0.0830103031 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
4 Hb_001541_170 0.0851119783 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
5 Hb_001418_050 0.0960747333 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
6 Hb_000098_230 0.1003585443 - - Potassium channel AKT2/3, putative [Ricinus communis]
7 Hb_000087_190 0.1028631446 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
8 Hb_001579_160 0.1148654913 - - PREDICTED: kininogen-1-like [Jatropha curcas]
9 Hb_027411_030 0.1157585909 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_000645_080 0.1180170117 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000920_120 0.1190947607 - - -
12 Hb_006618_100 0.1205970563 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
13 Hb_000580_210 0.1238925527 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
14 Hb_000206_270 0.1239658189 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_032260_040 0.1240505078 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011344_050 0.1242133931 - - PREDICTED: 21 kDa protein [Jatropha curcas]
17 Hb_027746_030 0.1248169415 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005588_050 0.1257110277 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011930_090 0.1277267325 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
20 Hb_002030_190 0.1296120177 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000847_110 Hb_000847_110 Hb_012217_010 Hb_012217_010 Hb_000847_110--Hb_012217_010 Hb_007441_100 Hb_007441_100 Hb_000847_110--Hb_007441_100 Hb_001541_170 Hb_001541_170 Hb_000847_110--Hb_001541_170 Hb_001418_050 Hb_001418_050 Hb_000847_110--Hb_001418_050 Hb_000098_230 Hb_000098_230 Hb_000847_110--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_000847_110--Hb_000087_190 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_012217_010--Hb_007441_100 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_000378_030 Hb_000378_030 Hb_007441_100--Hb_000378_030 Hb_007441_100--Hb_000098_230 Hb_007441_100--Hb_001418_050 Hb_007441_100--Hb_001541_170 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_001541_170--Hb_000098_230 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_001418_050--Hb_000098_230 Hb_001418_050--Hb_000378_030 Hb_001418_050--Hb_001541_170 Hb_001500_020 Hb_001500_020 Hb_001418_050--Hb_001500_020 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_000098_230--Hb_007919_010 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_000087_190--Hb_003582_030 Hb_000087_190--Hb_000098_230 Hb_000087_190--Hb_001541_170 Hb_000030_230 Hb_000030_230 Hb_000087_190--Hb_000030_230 Hb_000197_260 Hb_000197_260 Hb_000087_190--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_000087_190--Hb_000137_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60222 50.0531 26.7031 365.009 1.79989 10.4045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116577 0.549608 0 4.68744 53.1844

CAGE analysis