Hb_000197_260

Information

Type -
Description -
Location Contig197: 358357-359304
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025448mg
description hypothetical protein
nr
ID XP_007200807.1
description hypothetical protein PRUPE_ppa025448mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5VMD3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025448mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19783: 358753-359279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_260 0.0 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
2 Hb_005183_070 0.0693054079 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
3 Hb_152914_010 0.0708160558 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
4 Hb_029665_010 0.0747949202 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_001680_050 0.0760037853 - - -
6 Hb_002186_110 0.0807343222 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
7 Hb_007579_030 0.0831315689 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_000317_170 0.0841931153 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_007545_220 0.0854939388 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
10 Hb_000137_050 0.0859254164 - - conserved hypothetical protein [Ricinus communis]
11 Hb_180980_010 0.086149254 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
12 Hb_000953_110 0.0929040646 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
13 Hb_000000_260 0.0942875225 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
14 Hb_011381_050 0.0952058097 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
15 Hb_003582_030 0.0962048652 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
16 Hb_000368_040 0.0971589925 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_005588_050 0.0980554864 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000087_190 0.0984788568 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
19 Hb_000599_160 0.1008388832 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
20 Hb_000856_030 0.102155377 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000197_260 Hb_000197_260 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_000368_040 Hb_000368_040 Hb_005183_070--Hb_000368_040 Hb_005588_050 Hb_005588_050 Hb_005183_070--Hb_005588_050 Hb_005183_070--Hb_029665_010 Hb_000317_170 Hb_000317_170 Hb_005183_070--Hb_000317_170 Hb_005183_070--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_152914_010--Hb_000137_050 Hb_152914_010--Hb_007579_030 Hb_000000_260 Hb_000000_260 Hb_152914_010--Hb_000000_260 Hb_152914_010--Hb_002186_110 Hb_180980_010 Hb_180980_010 Hb_152914_010--Hb_180980_010 Hb_029665_010--Hb_001680_050 Hb_029665_010--Hb_007579_030 Hb_029665_010--Hb_000368_040 Hb_001401_120 Hb_001401_120 Hb_029665_010--Hb_001401_120 Hb_001680_050--Hb_007579_030 Hb_001680_050--Hb_000317_170 Hb_001680_050--Hb_000368_040 Hb_000856_030 Hb_000856_030 Hb_001680_050--Hb_000856_030 Hb_011381_050 Hb_011381_050 Hb_002186_110--Hb_011381_050 Hb_115572_010 Hb_115572_010 Hb_002186_110--Hb_115572_010 Hb_000172_450 Hb_000172_450 Hb_002186_110--Hb_000172_450 Hb_002186_110--Hb_180980_010 Hb_007579_030--Hb_001401_120 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.251246 11.9253 4.94077 56.7839 0.481377 0.131621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.787761 18.2929

CAGE analysis