Hb_000317_170

Information

Type -
Description -
Location Contig317: 118798-119993
Sequence    

Annotation

kegg
ID rcu:RCOM_1176560
description protein binding protein, putative
nr
ID XP_012088362.1
description PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
swissprot
ID Q6AY01
description E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133 PE=2 SV=1
trembl
ID A0A067JN43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25855 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring finger protein 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33367: 119130-120083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_170 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
2 Hb_000000_260 0.0661389646 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
3 Hb_001680_050 0.066342082 - - -
4 Hb_000856_030 0.0664401203 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000307_060 0.0763565207 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
6 Hb_029791_010 0.080470574 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
7 Hb_000599_160 0.0822474924 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
8 Hb_000197_260 0.0841931153 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
9 Hb_000030_230 0.08837006 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_000368_040 0.0888951938 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_180980_010 0.0906502692 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
12 Hb_000928_200 0.0923796775 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
13 Hb_007579_030 0.096654078 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_000137_050 0.0967019309 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005183_070 0.0976119696 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
16 Hb_152914_010 0.0993903315 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
17 Hb_007545_220 0.1090565542 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
18 Hb_000457_120 0.1120886231 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
19 Hb_029665_010 0.1129932542 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_133492_010 0.1145672441 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_170 Hb_000317_170 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_001680_050 Hb_001680_050 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_000000_260--Hb_029791_010 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000983_130 Hb_000983_130 Hb_000000_260--Hb_000983_130 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010 Hb_001680_050--Hb_007579_030 Hb_029665_010 Hb_029665_010 Hb_001680_050--Hb_029665_010 Hb_000368_040 Hb_000368_040 Hb_001680_050--Hb_000368_040 Hb_000197_260 Hb_000197_260 Hb_001680_050--Hb_000197_260 Hb_001680_050--Hb_000856_030 Hb_000856_030--Hb_000368_040 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_000856_030--Hb_007579_030 Hb_000856_030--Hb_000197_260 Hb_000030_230 Hb_000030_230 Hb_000307_060--Hb_000030_230 Hb_000307_060--Hb_000599_160 Hb_000928_200 Hb_000928_200 Hb_000307_060--Hb_000928_200 Hb_005183_070 Hb_005183_070 Hb_000307_060--Hb_005183_070 Hb_000307_060--Hb_000000_260 Hb_180980_010 Hb_180980_010 Hb_029791_010--Hb_180980_010 Hb_001936_120 Hb_001936_120 Hb_029791_010--Hb_001936_120 Hb_133492_010 Hb_133492_010 Hb_029791_010--Hb_133492_010 Hb_029791_010--Hb_000599_160 Hb_000599_160--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_000599_160--Hb_000864_050 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0959131 10.6473 4.29964 44.5133 0.13176 0.169135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439594 0.197529 0.089759 1.13726 16.9405

CAGE analysis