Hb_000864_050

Information

Type -
Description -
Location Contig864: 96117-96722
Sequence    

Annotation

kegg
ID rcu:RCOM_1154640
description zinc finger protein, putative
nr
ID XP_002524946.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q42485
description Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1
trembl
ID B9SG27
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1154640 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000864_050 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_133492_010 0.0783431229 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000599_160 0.0894458264 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
4 Hb_180980_010 0.094650512 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
5 Hb_002171_050 0.0951430569 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
6 Hb_004625_020 0.1043358529 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
7 Hb_001936_120 0.1114126128 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
8 Hb_029791_010 0.1123404317 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
9 Hb_000449_070 0.1154029819 - - unnamed protein product [Vitis vinifera]
10 Hb_002835_070 0.1160839227 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_170 0.116784824 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_001195_710 0.1170101895 - - glycosyltransferase family GT8 protein [Populus deltoides]
13 Hb_005183_070 0.11791093 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
14 Hb_002499_030 0.1184992941 - - receptor-kinase, putative [Ricinus communis]
15 Hb_001688_030 0.1188756042 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
16 Hb_004917_020 0.1198535472 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
17 Hb_000368_040 0.1212360506 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000928_200 0.1218570037 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
19 Hb_000856_030 0.1230569951 - - ATP binding protein, putative [Ricinus communis]
20 Hb_011381_050 0.1238622012 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000864_050 Hb_000864_050 Hb_133492_010 Hb_133492_010 Hb_000864_050--Hb_133492_010 Hb_000599_160 Hb_000599_160 Hb_000864_050--Hb_000599_160 Hb_180980_010 Hb_180980_010 Hb_000864_050--Hb_180980_010 Hb_002171_050 Hb_002171_050 Hb_000864_050--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000864_050--Hb_004625_020 Hb_001936_120 Hb_001936_120 Hb_000864_050--Hb_001936_120 Hb_133492_010--Hb_180980_010 Hb_133492_010--Hb_004625_020 Hb_133492_010--Hb_002171_050 Hb_004917_020 Hb_004917_020 Hb_133492_010--Hb_004917_020 Hb_029791_010 Hb_029791_010 Hb_133492_010--Hb_029791_010 Hb_000317_170 Hb_000317_170 Hb_000599_160--Hb_000317_170 Hb_000307_060 Hb_000307_060 Hb_000599_160--Hb_000307_060 Hb_000599_160--Hb_180980_010 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220 Hb_000599_160--Hb_029791_010 Hb_180980_010--Hb_029791_010 Hb_000197_260 Hb_000197_260 Hb_180980_010--Hb_000197_260 Hb_180980_010--Hb_000317_170 Hb_000137_050 Hb_000137_050 Hb_180980_010--Hb_000137_050 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_002171_050--Hb_004625_020 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_004625_020--Hb_000137_050 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_005305_040 Hb_005305_040 Hb_001936_120--Hb_005305_040 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.648951 0.438581 4.64309 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0781962 0 0.192295 1.81881

CAGE analysis