Hb_142056_010

Information

Type -
Description -
Location Contig142056: 828-1618
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004360mg
description hypothetical protein
nr
ID XP_012090001.1
description PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9SYD6
description MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2
trembl
ID A0A067JDZ9
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_25922 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11232: 1304-1755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142056_010 0.0 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
2 Hb_002000_100 0.0562489187 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
3 Hb_001360_020 0.0860216797 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
4 Hb_002007_330 0.0881625377 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
5 Hb_005391_050 0.0978923369 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
6 Hb_000453_290 0.1005539034 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
7 Hb_002384_030 0.100901292 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008731_010 0.1025615978 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
9 Hb_004625_020 0.1036457852 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
10 Hb_007403_100 0.1038383868 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
11 Hb_000344_030 0.1128271968 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
12 Hb_002370_050 0.1194556443 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
13 Hb_000477_020 0.1203233789 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
14 Hb_022693_090 0.1235110259 - - glycosyltransferase, putative [Ricinus communis]
15 Hb_001410_080 0.1250114811 - - ring finger protein, putative [Ricinus communis]
16 Hb_001268_290 0.1250854063 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
17 Hb_002890_110 0.125287938 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
18 Hb_003126_120 0.1271712013 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
19 Hb_000046_390 0.1277236691 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
20 Hb_133492_010 0.1283107132 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_142056_010 Hb_142056_010 Hb_002000_100 Hb_002000_100 Hb_142056_010--Hb_002000_100 Hb_001360_020 Hb_001360_020 Hb_142056_010--Hb_001360_020 Hb_002007_330 Hb_002007_330 Hb_142056_010--Hb_002007_330 Hb_005391_050 Hb_005391_050 Hb_142056_010--Hb_005391_050 Hb_000453_290 Hb_000453_290 Hb_142056_010--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_142056_010--Hb_002384_030 Hb_002000_100--Hb_002007_330 Hb_002000_100--Hb_001360_020 Hb_007403_100 Hb_007403_100 Hb_002000_100--Hb_007403_100 Hb_008731_010 Hb_008731_010 Hb_002000_100--Hb_008731_010 Hb_002000_100--Hb_002384_030 Hb_001360_020--Hb_002384_030 Hb_001360_020--Hb_002007_330 Hb_001360_020--Hb_000453_290 Hb_001360_020--Hb_008731_010 Hb_002007_330--Hb_007403_100 Hb_002007_330--Hb_008731_010 Hb_000344_030 Hb_000344_030 Hb_002007_330--Hb_000344_030 Hb_000477_020 Hb_000477_020 Hb_002007_330--Hb_000477_020 Hb_000023_180 Hb_000023_180 Hb_005391_050--Hb_000023_180 Hb_008948_010 Hb_008948_010 Hb_005391_050--Hb_008948_010 Hb_002835_070 Hb_002835_070 Hb_005391_050--Hb_002835_070 Hb_001131_050 Hb_001131_050 Hb_005391_050--Hb_001131_050 Hb_001976_100 Hb_001976_100 Hb_005391_050--Hb_001976_100 Hb_002592_070 Hb_002592_070 Hb_000453_290--Hb_002592_070 Hb_022693_090 Hb_022693_090 Hb_000453_290--Hb_022693_090 Hb_000468_050 Hb_000468_050 Hb_000453_290--Hb_000468_050 Hb_000453_290--Hb_002000_100 Hb_027405_010 Hb_027405_010 Hb_000453_290--Hb_027405_010 Hb_002384_030--Hb_008731_010 Hb_002384_030--Hb_027405_010 Hb_002384_030--Hb_022693_090 Hb_002384_030--Hb_000344_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.32828 3.06497 44.8925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.02279 14.7725

CAGE analysis