Hb_005391_050

Information

Type -
Description -
Location Contig5391: 46621-46869
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00650g
description POPTRDRAFT_565486; hypothetical protein
nr
ID XP_012084236.1
description PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K878
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47746: 46608-46902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005391_050 0.0 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
2 Hb_000023_180 0.0838419308 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
3 Hb_008948_010 0.0956113056 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
4 Hb_142056_010 0.0978923369 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
5 Hb_002835_070 0.0992497707 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001131_050 0.1098050982 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
7 Hb_001976_100 0.1104729194 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
8 Hb_180980_010 0.1142992257 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
9 Hb_133492_010 0.1168099565 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_004625_020 0.1168940917 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
11 Hb_000009_250 0.1198875218 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_005329_030 0.1205572339 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
13 Hb_000856_030 0.1231503437 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000137_050 0.1296460612 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001360_020 0.1312212891 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
16 Hb_000080_100 0.1332065257 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
17 Hb_002973_050 0.1334417429 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
18 Hb_000000_290 0.1349727472 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
19 Hb_029791_010 0.1349738849 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
20 Hb_002000_100 0.1358805091 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]

Gene co-expression network

sample Hb_005391_050 Hb_005391_050 Hb_000023_180 Hb_000023_180 Hb_005391_050--Hb_000023_180 Hb_008948_010 Hb_008948_010 Hb_005391_050--Hb_008948_010 Hb_142056_010 Hb_142056_010 Hb_005391_050--Hb_142056_010 Hb_002835_070 Hb_002835_070 Hb_005391_050--Hb_002835_070 Hb_001131_050 Hb_001131_050 Hb_005391_050--Hb_001131_050 Hb_001976_100 Hb_001976_100 Hb_005391_050--Hb_001976_100 Hb_000000_290 Hb_000000_290 Hb_000023_180--Hb_000000_290 Hb_000023_180--Hb_002835_070 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_000023_180--Hb_001976_100 Hb_001950_100 Hb_001950_100 Hb_000023_180--Hb_001950_100 Hb_004785_170 Hb_004785_170 Hb_008948_010--Hb_004785_170 Hb_002598_020 Hb_002598_020 Hb_008948_010--Hb_002598_020 Hb_011985_020 Hb_011985_020 Hb_008948_010--Hb_011985_020 Hb_004450_090 Hb_004450_090 Hb_008948_010--Hb_004450_090 Hb_000816_150 Hb_000816_150 Hb_008948_010--Hb_000816_150 Hb_002000_100 Hb_002000_100 Hb_142056_010--Hb_002000_100 Hb_001360_020 Hb_001360_020 Hb_142056_010--Hb_001360_020 Hb_002007_330 Hb_002007_330 Hb_142056_010--Hb_002007_330 Hb_000453_290 Hb_000453_290 Hb_142056_010--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_142056_010--Hb_002384_030 Hb_002973_050 Hb_002973_050 Hb_002835_070--Hb_002973_050 Hb_133974_010 Hb_133974_010 Hb_002835_070--Hb_133974_010 Hb_004917_020 Hb_004917_020 Hb_002835_070--Hb_004917_020 Hb_182869_010 Hb_182869_010 Hb_002835_070--Hb_182869_010 Hb_002835_070--Hb_000000_290 Hb_001131_050--Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_001131_050--Hb_000009_250 Hb_001131_050--Hb_000023_180 Hb_001709_080 Hb_001709_080 Hb_001131_050--Hb_001709_080 Hb_000080_100 Hb_000080_100 Hb_001131_050--Hb_000080_100 Hb_001976_100--Hb_000009_250 Hb_004930_020 Hb_004930_020 Hb_001976_100--Hb_004930_020 Hb_001976_100--Hb_002835_070 Hb_001396_130 Hb_001396_130 Hb_001976_100--Hb_001396_130 Hb_000334_030 Hb_000334_030 Hb_001976_100--Hb_000334_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.38166 0.832198 9.2461 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.18138 4.78387

CAGE analysis