Hb_002973_050

Information

Type -
Description -
Location Contig2973: 71096-71920
Sequence    

Annotation

kegg
ID rcu:RCOM_0832830
description hypothetical protein
nr
ID KDP46703.1
description hypothetical protein JCGZ_06491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06491 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31138: 63451-71533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_050 0.0 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
2 Hb_133974_010 0.0509013344 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
3 Hb_004917_020 0.0571751422 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
4 Hb_002835_070 0.0665929014 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001279_400 0.0817295034 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
6 Hb_005711_030 0.0954246278 - - hypothetical protein RCOM_0460020 [Ricinus communis]
7 Hb_000813_070 0.0971927249 - - conserved hypothetical protein [Ricinus communis]
8 Hb_182869_010 0.0999999773 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000676_230 0.1067891508 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
10 Hb_002171_050 0.1090563907 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
11 Hb_000364_090 0.1094009086 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
12 Hb_133492_010 0.1115247314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000368_050 0.1126964419 - - beta-galactosidase, putative [Ricinus communis]
14 Hb_000000_050 0.1127084384 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002894_080 0.1141823266 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000023_180 0.1146333128 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
17 Hb_004032_290 0.1156077727 - - protein binding protein, putative [Ricinus communis]
18 Hb_004650_120 0.1157262723 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
19 Hb_000000_290 0.1181858883 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
20 Hb_001976_100 0.1185689713 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002973_050 Hb_002973_050 Hb_133974_010 Hb_133974_010 Hb_002973_050--Hb_133974_010 Hb_004917_020 Hb_004917_020 Hb_002973_050--Hb_004917_020 Hb_002835_070 Hb_002835_070 Hb_002973_050--Hb_002835_070 Hb_001279_400 Hb_001279_400 Hb_002973_050--Hb_001279_400 Hb_005711_030 Hb_005711_030 Hb_002973_050--Hb_005711_030 Hb_000813_070 Hb_000813_070 Hb_002973_050--Hb_000813_070 Hb_133974_010--Hb_005711_030 Hb_000676_230 Hb_000676_230 Hb_133974_010--Hb_000676_230 Hb_133974_010--Hb_004917_020 Hb_147006_010 Hb_147006_010 Hb_133974_010--Hb_147006_010 Hb_004032_290 Hb_004032_290 Hb_133974_010--Hb_004032_290 Hb_004917_020--Hb_001279_400 Hb_002171_050 Hb_002171_050 Hb_004917_020--Hb_002171_050 Hb_000137_050 Hb_000137_050 Hb_004917_020--Hb_000137_050 Hb_004917_020--Hb_002835_070 Hb_000023_180 Hb_000023_180 Hb_002835_070--Hb_000023_180 Hb_002835_070--Hb_133974_010 Hb_182869_010 Hb_182869_010 Hb_002835_070--Hb_182869_010 Hb_000000_290 Hb_000000_290 Hb_002835_070--Hb_000000_290 Hb_001279_400--Hb_000813_070 Hb_001279_400--Hb_002171_050 Hb_002894_080 Hb_002894_080 Hb_001279_400--Hb_002894_080 Hb_000000_050 Hb_000000_050 Hb_001279_400--Hb_000000_050 Hb_005711_030--Hb_000813_070 Hb_001289_070 Hb_001289_070 Hb_005711_030--Hb_001289_070 Hb_000103_440 Hb_000103_440 Hb_005711_030--Hb_000103_440 Hb_004650_120 Hb_004650_120 Hb_005711_030--Hb_004650_120 Hb_000017_180 Hb_000017_180 Hb_005711_030--Hb_000017_180 Hb_002151_070 Hb_002151_070 Hb_000813_070--Hb_002151_070 Hb_000813_070--Hb_001289_070 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.326685 0.353083 1.97883 0 0.0249067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123616 1.23109

CAGE analysis