Hb_002835_070

Information

Type -
Description -
Location Contig2835: 57436-58404
Sequence    

Annotation

kegg
ID rcu:RCOM_1508460
description hypothetical protein
nr
ID XP_002511308.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002973_050 0.0665929014 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
3 Hb_000023_180 0.0846375875 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
4 Hb_133974_010 0.092351202 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
5 Hb_004917_020 0.0930874058 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
6 Hb_182869_010 0.0938587478 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000000_290 0.0944804739 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
8 Hb_001976_100 0.0948752503 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
9 Hb_002171_050 0.0954413608 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
10 Hb_133492_010 0.0974004315 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001279_400 0.0976900726 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
12 Hb_005391_050 0.0992497707 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
13 Hb_000009_250 0.1000367945 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_000245_110 0.1020113621 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
15 Hb_001366_300 0.1109831913 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
16 Hb_000864_050 0.1160839227 - - zinc finger protein, putative [Ricinus communis]
17 Hb_180980_010 0.1162828608 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
18 Hb_001511_220 0.1190334291 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
19 Hb_000813_070 0.1195777887 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000012_380 0.1199049007 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002835_070 Hb_002835_070 Hb_002973_050 Hb_002973_050 Hb_002835_070--Hb_002973_050 Hb_000023_180 Hb_000023_180 Hb_002835_070--Hb_000023_180 Hb_133974_010 Hb_133974_010 Hb_002835_070--Hb_133974_010 Hb_004917_020 Hb_004917_020 Hb_002835_070--Hb_004917_020 Hb_182869_010 Hb_182869_010 Hb_002835_070--Hb_182869_010 Hb_000000_290 Hb_000000_290 Hb_002835_070--Hb_000000_290 Hb_002973_050--Hb_133974_010 Hb_002973_050--Hb_004917_020 Hb_001279_400 Hb_001279_400 Hb_002973_050--Hb_001279_400 Hb_005711_030 Hb_005711_030 Hb_002973_050--Hb_005711_030 Hb_000813_070 Hb_000813_070 Hb_002973_050--Hb_000813_070 Hb_000023_180--Hb_000000_290 Hb_005391_050 Hb_005391_050 Hb_000023_180--Hb_005391_050 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_001976_100 Hb_001976_100 Hb_000023_180--Hb_001976_100 Hb_001950_100 Hb_001950_100 Hb_000023_180--Hb_001950_100 Hb_133974_010--Hb_005711_030 Hb_000676_230 Hb_000676_230 Hb_133974_010--Hb_000676_230 Hb_133974_010--Hb_004917_020 Hb_147006_010 Hb_147006_010 Hb_133974_010--Hb_147006_010 Hb_004032_290 Hb_004032_290 Hb_133974_010--Hb_004032_290 Hb_004917_020--Hb_001279_400 Hb_002171_050 Hb_002171_050 Hb_004917_020--Hb_002171_050 Hb_000137_050 Hb_000137_050 Hb_004917_020--Hb_000137_050 Hb_000368_050 Hb_000368_050 Hb_182869_010--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_182869_010--Hb_001511_220 Hb_002925_060 Hb_002925_060 Hb_182869_010--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_182869_010--Hb_000620_050 Hb_182869_010--Hb_005711_030 Hb_003058_240 Hb_003058_240 Hb_182869_010--Hb_003058_240 Hb_000622_030 Hb_000622_030 Hb_000000_290--Hb_000622_030 Hb_005183_100 Hb_005183_100 Hb_000000_290--Hb_005183_100 Hb_005723_090 Hb_005723_090 Hb_000000_290--Hb_005723_090 Hb_016277_030 Hb_016277_030 Hb_000000_290--Hb_016277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0998331 0.0719354 0.532738 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0333688 0.338452

CAGE analysis