Hb_005723_090

Information

Type -
Description -
Location Contig5723: 122343-122741
Sequence    

Annotation

kegg
ID rcu:RCOM_0976160
description hypothetical protein
nr
ID XP_002521248.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5H9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005723_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005183_100 0.0433112195 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
3 Hb_005057_030 0.0604070112 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_000120_480 0.0622612078 - - -
5 Hb_000622_030 0.0665154689 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
6 Hb_001158_250 0.0724773653 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001305_020 0.0844038635 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
8 Hb_009522_020 0.0850350039 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
9 Hb_003226_230 0.0861829085 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
10 Hb_000000_290 0.0890039262 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
11 Hb_125961_010 0.091447316 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000271_130 0.0938294665 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
13 Hb_016277_030 0.0945191121 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
14 Hb_162676_010 0.0998301345 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001206_100 0.1002338293 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
16 Hb_005051_010 0.1076801438 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_004204_220 0.1093229922 - - -
18 Hb_001232_040 0.1096192593 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
19 Hb_002713_060 0.1108757491 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
20 Hb_002095_020 0.110944097 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005723_090 Hb_005723_090 Hb_005183_100 Hb_005183_100 Hb_005723_090--Hb_005183_100 Hb_005057_030 Hb_005057_030 Hb_005723_090--Hb_005057_030 Hb_000120_480 Hb_000120_480 Hb_005723_090--Hb_000120_480 Hb_000622_030 Hb_000622_030 Hb_005723_090--Hb_000622_030 Hb_001158_250 Hb_001158_250 Hb_005723_090--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_005723_090--Hb_001305_020 Hb_001206_100 Hb_001206_100 Hb_005183_100--Hb_001206_100 Hb_016277_030 Hb_016277_030 Hb_005183_100--Hb_016277_030 Hb_009522_020 Hb_009522_020 Hb_005183_100--Hb_009522_020 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_125961_010 Hb_125961_010 Hb_005057_030--Hb_125961_010 Hb_005057_030--Hb_000120_480 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_003226_230 Hb_003226_230 Hb_005057_030--Hb_003226_230 Hb_000120_480--Hb_003226_230 Hb_162676_010 Hb_162676_010 Hb_000120_480--Hb_162676_010 Hb_000120_480--Hb_125961_010 Hb_000120_480--Hb_001158_250 Hb_000622_030--Hb_001158_250 Hb_000622_030--Hb_001305_020 Hb_000622_030--Hb_000000_290 Hb_001232_040 Hb_001232_040 Hb_000622_030--Hb_001232_040 Hb_000622_030--Hb_005183_100 Hb_001158_250--Hb_001232_040 Hb_001158_250--Hb_001305_020 Hb_000271_130 Hb_000271_130 Hb_001158_250--Hb_000271_130 Hb_005051_010 Hb_005051_010 Hb_001305_020--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_001305_020--Hb_002902_070 Hb_000834_100 Hb_000834_100 Hb_001305_020--Hb_000834_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.179802 0.143013 0.421811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0674258 0.552404

CAGE analysis