Hb_009522_020

Information

Type -
Description -
Location Contig9522: 47048-53485
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19140g
description POPTRDRAFT_802216; hypothetical protein
nr
ID XP_012071608.1
description PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
swissprot
ID Q8H1Z0
description Protein ECERIFERUM 3 OS=Arabidopsis thaliana GN=CER3 PE=1 SV=1
trembl
ID A0A067KRN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04115 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein eceriferum 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63437: 46894-53489
cDNA
(Sanger)
(ID:Location)		 038_J16.ab1: 47063-48127 , 046_L03.ab1: 47063-48123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009522_020 0.0 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
2 Hb_010222_060 0.0619680862 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_013394_120 0.0632072021 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
4 Hb_173387_010 0.0642482433 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
5 Hb_001206_100 0.0724651173 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
6 Hb_005183_100 0.0739607403 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
7 Hb_001296_060 0.0741596476 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_132840_170 0.0780429534 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
9 Hb_014700_030 0.0837854534 - - tryptophan synthase beta chain, putative [Ricinus communis]
10 Hb_000120_480 0.0848890191 - - -
11 Hb_005723_090 0.0850350039 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001789_120 0.0858851667 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
13 Hb_002713_060 0.0910132188 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
14 Hb_001098_040 0.0929359206 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
15 Hb_005057_030 0.0935355233 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_000271_130 0.0950487881 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
17 Hb_002942_200 0.101551883 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
18 Hb_000395_230 0.1043195129 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
19 Hb_008689_010 0.1066149912 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
20 Hb_000329_440 0.1092995776 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]

Gene co-expression network

sample Hb_009522_020 Hb_009522_020 Hb_010222_060 Hb_010222_060 Hb_009522_020--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_009522_020--Hb_013394_120 Hb_173387_010 Hb_173387_010 Hb_009522_020--Hb_173387_010 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_005183_100 Hb_005183_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_010222_060--Hb_013394_120 Hb_014700_030 Hb_014700_030 Hb_010222_060--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_010222_060--Hb_001789_120 Hb_132840_170 Hb_132840_170 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_013394_120--Hb_001789_120 Hb_013394_120--Hb_132840_170 Hb_000818_090 Hb_000818_090 Hb_013394_120--Hb_000818_090 Hb_013394_120--Hb_014700_030 Hb_173387_010--Hb_132840_170 Hb_000958_090 Hb_000958_090 Hb_173387_010--Hb_000958_090 Hb_173387_010--Hb_002713_060 Hb_173387_010--Hb_010222_060 Hb_004835_020 Hb_004835_020 Hb_173387_010--Hb_004835_020 Hb_001206_100--Hb_005183_100 Hb_009421_070 Hb_009421_070 Hb_001206_100--Hb_009421_070 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_016277_030 Hb_016277_030 Hb_001206_100--Hb_016277_030 Hb_004032_190 Hb_004032_190 Hb_001206_100--Hb_004032_190 Hb_005723_090 Hb_005723_090 Hb_005183_100--Hb_005723_090 Hb_005183_100--Hb_016277_030 Hb_005057_030 Hb_005057_030 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_001296_060--Hb_001206_100 Hb_001296_060--Hb_009421_070 Hb_001098_040 Hb_001098_040 Hb_001296_060--Hb_001098_040 Hb_001296_060--Hb_005183_100 Hb_001296_060--Hb_002942_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 15.6812 21.311 40.1423 0 0.0306866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0553611 0 0 3.63383 52.2687

CAGE analysis