Hb_002942_200

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2942: 193688-195841
Sequence    

Annotation

kegg
ID tcc:TCM_014729
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012090613.1
description PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
swissprot
ID Q93W88
description Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1
trembl
ID A0A067JRD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26386 PE=4 SV=1
Gene Ontology
ID GO:0003677
description basic helix-loop-helix dna-binding superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30812: 193722-193969 , PASA_asmbl_30813: 194246-195825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_200 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
2 Hb_001098_040 0.0547482945 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
3 Hb_008221_200 0.0663913816 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
4 Hb_001206_100 0.0717867038 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
5 Hb_009421_070 0.0828755745 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
6 Hb_007270_020 0.084326811 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
7 Hb_009393_090 0.0889642025 - - acyltransferase, putative [Ricinus communis]
8 Hb_001268_150 0.0912015547 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_000977_020 0.0915598204 - - beta-hexosaminidase, putative [Ricinus communis]
10 Hb_000290_030 0.0925097582 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
11 Hb_000160_250 0.0929026861 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
12 Hb_000718_060 0.0954654835 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
13 Hb_001417_060 0.0968788191 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
14 Hb_000329_440 0.0972595853 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
15 Hb_002724_010 0.0978548822 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
16 Hb_017358_020 0.098542207 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
17 Hb_001296_060 0.1005810658 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_009522_020 0.101551883 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
19 Hb_013394_120 0.1018849702 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
20 Hb_060253_010 0.1048079653 - - hypothetical protein JCGZ_14707 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_200 Hb_002942_200 Hb_001098_040 Hb_001098_040 Hb_002942_200--Hb_001098_040 Hb_008221_200 Hb_008221_200 Hb_002942_200--Hb_008221_200 Hb_001206_100 Hb_001206_100 Hb_002942_200--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_002942_200--Hb_009421_070 Hb_007270_020 Hb_007270_020 Hb_002942_200--Hb_007270_020 Hb_009393_090 Hb_009393_090 Hb_002942_200--Hb_009393_090 Hb_000329_440 Hb_000329_440 Hb_001098_040--Hb_000329_440 Hb_001098_040--Hb_009421_070 Hb_060253_010 Hb_060253_010 Hb_001098_040--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_001098_040--Hb_000627_050 Hb_000977_020 Hb_000977_020 Hb_001098_040--Hb_000977_020 Hb_000718_060 Hb_000718_060 Hb_008221_200--Hb_000718_060 Hb_008054_030 Hb_008054_030 Hb_008221_200--Hb_008054_030 Hb_008221_200--Hb_009393_090 Hb_001117_050 Hb_001117_050 Hb_008221_200--Hb_001117_050 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_005183_100 Hb_005183_100 Hb_001206_100--Hb_005183_100 Hb_001206_100--Hb_009421_070 Hb_009522_020 Hb_009522_020 Hb_001206_100--Hb_009522_020 Hb_016277_030 Hb_016277_030 Hb_001206_100--Hb_016277_030 Hb_004032_190 Hb_004032_190 Hb_001206_100--Hb_004032_190 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_000784_060 Hb_000784_060 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_009421_070--Hb_004032_190 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_007270_020--Hb_060253_010 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_009393_090--Hb_000718_060 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_001100_070 Hb_001100_070 Hb_009393_090--Hb_001100_070 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_009393_090--Hb_007270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.879534 2.22542 3.55045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.513806 3.40738

CAGE analysis