Hb_009788_020

Information

Type -
Description -
Location Contig9788: 34754-46707
Sequence    

Annotation

kegg
ID tcc:TCM_042309
description Leucine-rich repeat protein kinase family protein isoform 1
nr
ID XP_012077849.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
swissprot
ID C0LGD7
description Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=2 SV=2
trembl
ID A0A067LBA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17284 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g06840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64288: 34822-46634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009788_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
2 Hb_000212_410 0.0481136541 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
3 Hb_000703_120 0.0488483745 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
4 Hb_000627_050 0.0614327244 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
5 Hb_007270_020 0.0635756059 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
6 Hb_060253_010 0.0742210305 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
7 Hb_001488_420 0.0823284605 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
8 Hb_000023_130 0.0836154771 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
9 Hb_002724_010 0.0842005762 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
10 Hb_002890_200 0.0865717517 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
11 Hb_002822_010 0.0875144912 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
12 Hb_004855_080 0.0911292044 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
13 Hb_000008_150 0.0954655197 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
14 Hb_131876_010 0.0970658441 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
15 Hb_002835_310 0.0977121228 - - ATP binding protein, putative [Ricinus communis]
16 Hb_003938_230 0.0984091754 - - Potassium transporter, putative [Ricinus communis]
17 Hb_005725_240 0.0990727969 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
18 Hb_000977_020 0.0991979942 - - beta-hexosaminidase, putative [Ricinus communis]
19 Hb_069696_020 0.1011184253 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
20 Hb_000759_040 0.1017364456 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]

Gene co-expression network

sample Hb_009788_020 Hb_009788_020 Hb_000212_410 Hb_000212_410 Hb_009788_020--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_009788_020--Hb_000703_120 Hb_000627_050 Hb_000627_050 Hb_009788_020--Hb_000627_050 Hb_007270_020 Hb_007270_020 Hb_009788_020--Hb_007270_020 Hb_060253_010 Hb_060253_010 Hb_009788_020--Hb_060253_010 Hb_001488_420 Hb_001488_420 Hb_009788_020--Hb_001488_420 Hb_000212_410--Hb_000627_050 Hb_000212_410--Hb_000703_120 Hb_000212_410--Hb_007270_020 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_000212_410--Hb_060253_010 Hb_000703_120--Hb_000627_050 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_000703_120--Hb_002724_010 Hb_000703_120--Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_007270_020--Hb_060253_010 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_003435_030 Hb_003435_030 Hb_060253_010--Hb_003435_030 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000046_120 Hb_000046_120 Hb_060253_010--Hb_000046_120 Hb_004855_080 Hb_004855_080 Hb_001488_420--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001488_420--Hb_000008_150 Hb_000759_040 Hb_000759_040 Hb_001488_420--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_001488_420--Hb_004218_140 Hb_003506_010 Hb_003506_010 Hb_001488_420--Hb_003506_010 Hb_004602_010 Hb_004602_010 Hb_001488_420--Hb_004602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0281803 3.71242 19.7289 16.3059 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0129134 0.0508104 0.019473 4.01603 21.0278

CAGE analysis