Hb_004218_140

Information

Type -
Description -
Location Contig4218: 147448-150705
Sequence    

Annotation

kegg
ID rcu:RCOM_1452710
description DNA binding protein, putative
nr
ID XP_012068647.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
swissprot
ID Q8L7A4
description Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1
trembl
ID B9RGB8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1452710 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41674: 146994-150705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_140 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
2 Hb_004602_010 0.0708430224 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
3 Hb_001488_420 0.078804188 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
4 Hb_121313_010 0.081411007 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
5 Hb_005892_050 0.0843501525 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
6 Hb_008304_010 0.0910609381 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
7 Hb_000627_040 0.0918151204 - - leucine-rich repeat protein, putative [Ricinus communis]
8 Hb_000759_040 0.0945729015 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
9 Hb_001269_060 0.0964964439 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
10 Hb_000008_150 0.0996662309 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_062807_010 0.1028252 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
12 Hb_007313_030 0.1033560993 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
13 Hb_003101_020 0.1040910241 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
14 Hb_004592_010 0.1055612331 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
15 Hb_003666_070 0.1061600473 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
16 Hb_002518_040 0.1081984322 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_000739_170 0.1091015127 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
18 Hb_004855_080 0.1115036222 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
19 Hb_003938_230 0.1116084386 - - Potassium transporter, putative [Ricinus communis]
20 Hb_019570_010 0.1126016239 - - lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004218_140 Hb_004218_140 Hb_004602_010 Hb_004602_010 Hb_004218_140--Hb_004602_010 Hb_001488_420 Hb_001488_420 Hb_004218_140--Hb_001488_420 Hb_121313_010 Hb_121313_010 Hb_004218_140--Hb_121313_010 Hb_005892_050 Hb_005892_050 Hb_004218_140--Hb_005892_050 Hb_008304_010 Hb_008304_010 Hb_004218_140--Hb_008304_010 Hb_000627_040 Hb_000627_040 Hb_004218_140--Hb_000627_040 Hb_000759_040 Hb_000759_040 Hb_004602_010--Hb_000759_040 Hb_004602_010--Hb_005892_050 Hb_000008_150 Hb_000008_150 Hb_004602_010--Hb_000008_150 Hb_004602_010--Hb_001488_420 Hb_004602_010--Hb_008304_010 Hb_004855_080 Hb_004855_080 Hb_001488_420--Hb_004855_080 Hb_001488_420--Hb_000008_150 Hb_001488_420--Hb_000759_040 Hb_003506_010 Hb_003506_010 Hb_001488_420--Hb_003506_010 Hb_121313_010--Hb_000627_040 Hb_001269_060 Hb_001269_060 Hb_121313_010--Hb_001269_060 Hb_000086_470 Hb_000086_470 Hb_121313_010--Hb_000086_470 Hb_001377_120 Hb_001377_120 Hb_121313_010--Hb_001377_120 Hb_007632_160 Hb_007632_160 Hb_121313_010--Hb_007632_160 Hb_005892_050--Hb_000759_040 Hb_006618_110 Hb_006618_110 Hb_005892_050--Hb_006618_110 Hb_007545_070 Hb_007545_070 Hb_005892_050--Hb_007545_070 Hb_003101_020 Hb_003101_020 Hb_005892_050--Hb_003101_020 Hb_003938_230 Hb_003938_230 Hb_008304_010--Hb_003938_230 Hb_062807_010 Hb_062807_010 Hb_008304_010--Hb_062807_010 Hb_008304_010--Hb_001488_420 Hb_004592_010 Hb_004592_010 Hb_008304_010--Hb_004592_010 Hb_002490_060 Hb_002490_060 Hb_000627_040--Hb_002490_060 Hb_007237_020 Hb_007237_020 Hb_000627_040--Hb_007237_020 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_002053_180 Hb_002053_180 Hb_000627_040--Hb_002053_180 Hb_006922_020 Hb_006922_020 Hb_000627_040--Hb_006922_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120517 3.67929 31.5459 16.4326 0.0251584 0.0922835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.091785 0.144421 0.135761 5.38869 16.529

CAGE analysis