Hb_062807_010

Information

Type -
Description -
Location Contig62807: 15054-17463
Sequence    

Annotation

kegg
ID rcu:RCOM_1039640
description Protein VERNALIZATION-INSENSITIVE, putative
nr
ID KDP41489.1
description hypothetical protein JCGZ_15896 [Jatropha curcas]
swissprot
ID Q9FIE3
description Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=1 SV=2
trembl
ID A0A067LBJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15896 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51760: 15141-15345 , PASA_asmbl_51761: 15367-15648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062807_010 0.0 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
2 Hb_001439_050 0.0594030768 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
3 Hb_003101_020 0.0724342019 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
4 Hb_108576_020 0.083303386 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004602_010 0.08462062 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
6 Hb_008304_010 0.0899694259 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
7 Hb_007313_030 0.0951538365 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
8 Hb_002757_010 0.1004500529 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
9 Hb_001153_160 0.1025699944 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_002518_040 0.1026804836 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_004218_140 0.1028252 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
12 Hb_004213_010 0.1052515123 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_007520_050 0.1053298925 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
14 Hb_011671_050 0.1093235327 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
15 Hb_000077_300 0.1104411781 - - PREDICTED: expansin-B3-like [Jatropha curcas]
16 Hb_000739_170 0.1112949144 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
17 Hb_001348_040 0.1113165861 - - hypothetical protein VITISV_006651 [Vitis vinifera]
18 Hb_005305_160 0.1164327118 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000297_210 0.1167391348 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
20 Hb_174168_010 0.1170744892 - - hypothetical protein JCGZ_06105 [Jatropha curcas]

Gene co-expression network

sample Hb_062807_010 Hb_062807_010 Hb_001439_050 Hb_001439_050 Hb_062807_010--Hb_001439_050 Hb_003101_020 Hb_003101_020 Hb_062807_010--Hb_003101_020 Hb_108576_020 Hb_108576_020 Hb_062807_010--Hb_108576_020 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_007313_030 Hb_007313_030 Hb_062807_010--Hb_007313_030 Hb_001439_050--Hb_003101_020 Hb_001439_050--Hb_108576_020 Hb_002518_040 Hb_002518_040 Hb_001439_050--Hb_002518_040 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_003101_020--Hb_108576_020 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_003101_020--Hb_000722_030 Hb_001153_160 Hb_001153_160 Hb_108576_020--Hb_001153_160 Hb_004213_010 Hb_004213_010 Hb_108576_020--Hb_004213_010 Hb_108576_020--Hb_007313_030 Hb_000759_040 Hb_000759_040 Hb_004602_010--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_004602_010--Hb_004218_140 Hb_005892_050 Hb_005892_050 Hb_004602_010--Hb_005892_050 Hb_000008_150 Hb_000008_150 Hb_004602_010--Hb_000008_150 Hb_001488_420 Hb_001488_420 Hb_004602_010--Hb_001488_420 Hb_004602_010--Hb_008304_010 Hb_003938_230 Hb_003938_230 Hb_008304_010--Hb_003938_230 Hb_008304_010--Hb_004218_140 Hb_008304_010--Hb_001488_420 Hb_004592_010 Hb_004592_010 Hb_008304_010--Hb_004592_010 Hb_007313_030--Hb_002518_040 Hb_000086_470 Hb_000086_470 Hb_007313_030--Hb_000086_470 Hb_007313_030--Hb_003101_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.085978 1.6456 0.794206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.249889 0.596549

CAGE analysis