Hb_003938_230

Information

Type -
Description -
Location Contig3938: 200285-206064
Sequence    

Annotation

kegg
ID rcu:RCOM_0245560
description Potassium transporter, putative
nr
ID XP_002534415.1
description Potassium transporter, putative [Ricinus communis]
swissprot
ID Q8W4I4
description Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1
trembl
ID B9T846
description Potassium transporter OS=Ricinus communis GN=RCOM_0245560 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39442: 200187-206419 , PASA_asmbl_39443: 200102-206696 , PASA_asmbl_39444: 203314-203495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_230 0.0 - - Potassium transporter, putative [Ricinus communis]
2 Hb_002835_310 0.0776998174 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001516_010 0.0816953658 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
4 Hb_008304_010 0.0828198997 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
5 Hb_002822_010 0.0914939398 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
6 Hb_001488_420 0.0934615741 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
7 Hb_000008_150 0.0957853249 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
8 Hb_002609_120 0.0965759005 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
9 Hb_009788_020 0.0984091754 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
10 Hb_002391_030 0.0988821361 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
11 Hb_000156_110 0.1019697528 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
12 Hb_004122_010 0.1025419761 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
13 Hb_015048_020 0.1029551702 - - PREDICTED: myb-like protein D [Jatropha curcas]
14 Hb_001079_060 0.1030061956 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
15 Hb_001514_030 0.1038300301 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
16 Hb_005535_070 0.1044304234 - - conserved hypothetical protein [Ricinus communis]
17 Hb_032920_020 0.1058357072 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_000996_030 0.1065138003 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
19 Hb_168918_010 0.1065924166 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_000212_410 0.1091203764 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003938_230 Hb_003938_230 Hb_002835_310 Hb_002835_310 Hb_003938_230--Hb_002835_310 Hb_001516_010 Hb_001516_010 Hb_003938_230--Hb_001516_010 Hb_008304_010 Hb_008304_010 Hb_003938_230--Hb_008304_010 Hb_002822_010 Hb_002822_010 Hb_003938_230--Hb_002822_010 Hb_001488_420 Hb_001488_420 Hb_003938_230--Hb_001488_420 Hb_000008_150 Hb_000008_150 Hb_003938_230--Hb_000008_150 Hb_000156_110 Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_000424_130 Hb_000424_130 Hb_002835_310--Hb_000424_130 Hb_002835_310--Hb_001516_010 Hb_007545_070 Hb_007545_070 Hb_002835_310--Hb_007545_070 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_111985_100 Hb_111985_100 Hb_001516_010--Hb_111985_100 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_004602_010 Hb_004602_010 Hb_008304_010--Hb_004602_010 Hb_062807_010 Hb_062807_010 Hb_008304_010--Hb_062807_010 Hb_004218_140 Hb_004218_140 Hb_008304_010--Hb_004218_140 Hb_008304_010--Hb_001488_420 Hb_004592_010 Hb_004592_010 Hb_008304_010--Hb_004592_010 Hb_002822_010--Hb_001488_420 Hb_009788_020 Hb_009788_020 Hb_002822_010--Hb_009788_020 Hb_002890_200 Hb_002890_200 Hb_002822_010--Hb_002890_200 Hb_004855_080 Hb_004855_080 Hb_002822_010--Hb_004855_080 Hb_000703_120 Hb_000703_120 Hb_002822_010--Hb_000703_120 Hb_001488_420--Hb_004855_080 Hb_001488_420--Hb_000008_150 Hb_000759_040 Hb_000759_040 Hb_001488_420--Hb_000759_040 Hb_001488_420--Hb_004218_140 Hb_003506_010 Hb_003506_010 Hb_001488_420--Hb_003506_010 Hb_001488_420--Hb_004602_010 Hb_000008_150--Hb_004855_080 Hb_001405_040 Hb_001405_040 Hb_000008_150--Hb_001405_040 Hb_000008_150--Hb_004602_010 Hb_000008_150--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_000008_150--Hb_005892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.83551 7.98416 6.89153 0 0.0452695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.35916 5.73113

CAGE analysis