Hb_001405_040

Information

Type -
Description -
Location Contig1405: 104318-107392
Sequence    

Annotation

kegg
ID rcu:RCOM_0909590
description acyltransferase, putative
nr
ID XP_012069740.1
description PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
swissprot
ID Q5XEP9
description 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2
trembl
ID A0A067KZ98
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_02261 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10952: 106030-106421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_040 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
2 Hb_020805_070 0.0637823898 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
3 Hb_004855_080 0.0712460449 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
4 Hb_000008_150 0.0745511504 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
5 Hb_004116_050 0.0751568136 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
6 Hb_003506_010 0.0771024975 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_005892_040 0.0831016232 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
8 Hb_004162_320 0.0888413527 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
9 Hb_001244_070 0.0922565901 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
10 Hb_000416_090 0.0934085782 - - Aquaporin NIP1.1, putative [Ricinus communis]
11 Hb_029639_030 0.0947808011 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
12 Hb_000162_200 0.0948585932 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
13 Hb_001488_420 0.0974435997 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
14 Hb_000181_220 0.1011803889 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
15 Hb_000318_010 0.1026443654 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
16 Hb_000901_010 0.1032210695 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
17 Hb_002078_320 0.1063555835 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
18 Hb_000703_120 0.1065559594 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
19 Hb_002890_200 0.1068609834 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
20 Hb_000152_120 0.107425879 - - alpha-l-fucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001405_040 Hb_001405_040 Hb_020805_070 Hb_020805_070 Hb_001405_040--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_001405_040--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001405_040--Hb_000008_150 Hb_004116_050 Hb_004116_050 Hb_001405_040--Hb_004116_050 Hb_003506_010 Hb_003506_010 Hb_001405_040--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_001405_040--Hb_005892_040 Hb_004162_320 Hb_004162_320 Hb_020805_070--Hb_004162_320 Hb_020805_070--Hb_003506_010 Hb_020805_070--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_020805_070--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_020805_070--Hb_000901_010 Hb_004855_080--Hb_000008_150 Hb_001488_420 Hb_001488_420 Hb_004855_080--Hb_001488_420 Hb_000759_040 Hb_000759_040 Hb_004855_080--Hb_000759_040 Hb_004855_080--Hb_003506_010 Hb_004602_010 Hb_004602_010 Hb_004855_080--Hb_004602_010 Hb_000008_150--Hb_001488_420 Hb_000008_150--Hb_004602_010 Hb_000008_150--Hb_003506_010 Hb_000008_150--Hb_005892_040 Hb_067558_010 Hb_067558_010 Hb_004116_050--Hb_067558_010 Hb_000416_090 Hb_000416_090 Hb_004116_050--Hb_000416_090 Hb_001244_070 Hb_001244_070 Hb_004116_050--Hb_001244_070 Hb_004116_050--Hb_004855_080 Hb_005181_190 Hb_005181_190 Hb_004116_050--Hb_005181_190 Hb_003506_010--Hb_004162_320 Hb_003506_010--Hb_005892_040 Hb_003506_010--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_005892_040--Hb_004162_320 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.90462 11.7731 10.2606 0 0.0120834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.69462 12.4428

CAGE analysis