Hb_004162_320

Information

Type -
Description -
Location Contig4162: 280168-285459
Sequence    

Annotation

kegg
ID rcu:RCOM_0474860
description hypothetical protein
nr
ID XP_012064690.1
description PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
swissprot
ID O14099
description Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1
trembl
ID A0A067L668
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05433 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41199: 280159-281476 , PASA_asmbl_41201: 281643-281758 , PASA_asmbl_41202: 281890-282360 , PASA_asmbl_41203: 282868-283971 , PASA_asmbl_41204: 284524-285245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_320 0.0 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
2 Hb_003506_010 0.0399593975 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
3 Hb_005892_040 0.057314559 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
4 Hb_020805_070 0.0663679118 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
5 Hb_002078_320 0.0694402009 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
6 Hb_000162_200 0.0817381958 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
7 Hb_001405_040 0.0888413527 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
8 Hb_001135_010 0.0894846349 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_026240_020 0.0946086861 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
10 Hb_001104_020 0.0968995836 - - DNA binding protein, putative [Ricinus communis]
11 Hb_002635_020 0.097857969 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
12 Hb_015001_030 0.1039921151 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
13 Hb_004855_080 0.1046160058 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
14 Hb_000152_120 0.1064688452 - - alpha-l-fucosidase, putative [Ricinus communis]
15 Hb_001488_420 0.1068012637 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
16 Hb_000977_030 0.1106731577 - - unnamed protein product [Vitis vinifera]
17 Hb_000901_010 0.1112912183 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
18 Hb_000008_150 0.1114806083 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
19 Hb_000732_220 0.1127395145 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
20 Hb_010174_180 0.1139087743 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004162_320 Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_004162_320--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_004162_320--Hb_005892_040 Hb_020805_070 Hb_020805_070 Hb_004162_320--Hb_020805_070 Hb_002078_320 Hb_002078_320 Hb_004162_320--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_004162_320--Hb_000162_200 Hb_001405_040 Hb_001405_040 Hb_004162_320--Hb_001405_040 Hb_003506_010--Hb_005892_040 Hb_003506_010--Hb_002078_320 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080 Hb_003506_010--Hb_000162_200 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_005892_040--Hb_001405_040 Hb_005892_040--Hb_020805_070 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030 Hb_020805_070--Hb_001405_040 Hb_020805_070--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_020805_070--Hb_000901_010 Hb_002078_320--Hb_000901_010 Hb_000987_020 Hb_000987_020 Hb_002078_320--Hb_000987_020 Hb_000185_170 Hb_000185_170 Hb_002078_320--Hb_000185_170 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_000162_200--Hb_000977_030 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080 Hb_001405_040--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001405_040--Hb_000008_150 Hb_004116_050 Hb_004116_050 Hb_001405_040--Hb_004116_050 Hb_001405_040--Hb_003506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.65591 9.08047 7.8754 0.0270185 0.026548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0327487 0 0 4.99143 7.59827

CAGE analysis