Hb_007894_080

Information

Type -
Description -
Location Contig7894: 71192-77095
Sequence    

Annotation

kegg
ID rcu:RCOM_0584600
description hypothetical protein
nr
ID XP_002522942.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58260: 76669-76960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000152_880 0.0750181538 - - -
3 Hb_033772_060 0.0759399911 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000017_140 0.0781242449 - - polygalacturonase, putative [Ricinus communis]
5 Hb_007101_140 0.0826691998 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
6 Hb_029639_030 0.0887055053 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
7 Hb_000162_200 0.0912027745 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
8 Hb_003894_180 0.0951209482 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
9 Hb_000181_220 0.0982856336 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
10 Hb_000836_030 0.1083589585 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
11 Hb_001405_040 0.1088497112 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
12 Hb_000318_010 0.1095741639 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
13 Hb_004607_160 0.1126608886 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
14 Hb_000977_030 0.1127762724 - - unnamed protein product [Vitis vinifera]
15 Hb_020805_070 0.1159291585 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
16 Hb_010557_020 0.116383969 - - Mlo protein [Hevea brasiliensis]
17 Hb_144449_010 0.119132757 - - Potassium transporter, putative [Ricinus communis]
18 Hb_005892_040 0.1192922163 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
19 Hb_004162_140 0.1207805695 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
20 Hb_000290_030 0.1213085783 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007894_080 Hb_007894_080 Hb_000152_880 Hb_000152_880 Hb_007894_080--Hb_000152_880 Hb_033772_060 Hb_033772_060 Hb_007894_080--Hb_033772_060 Hb_000017_140 Hb_000017_140 Hb_007894_080--Hb_000017_140 Hb_007101_140 Hb_007101_140 Hb_007894_080--Hb_007101_140 Hb_029639_030 Hb_029639_030 Hb_007894_080--Hb_029639_030 Hb_000162_200 Hb_000162_200 Hb_007894_080--Hb_000162_200 Hb_000152_880--Hb_000017_140 Hb_000152_880--Hb_007101_140 Hb_000152_880--Hb_033772_060 Hb_000152_880--Hb_029639_030 Hb_027506_030 Hb_027506_030 Hb_000152_880--Hb_027506_030 Hb_033772_060--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_033772_060--Hb_000181_220 Hb_093218_010 Hb_093218_010 Hb_033772_060--Hb_093218_010 Hb_005892_040 Hb_005892_040 Hb_033772_060--Hb_005892_040 Hb_000017_140--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_000017_140--Hb_010264_010 Hb_004466_090 Hb_004466_090 Hb_000017_140--Hb_004466_090 Hb_004804_010 Hb_004804_010 Hb_000017_140--Hb_004804_010 Hb_007101_140--Hb_029639_030 Hb_007101_140--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_007101_140--Hb_004162_140 Hb_029639_030--Hb_000181_220 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_003506_010 Hb_003506_010 Hb_000162_200--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_000162_200--Hb_004162_320 Hb_000162_200--Hb_000977_030 Hb_000162_200--Hb_005892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.752634 2.69639 4.53629 0.0385182 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.07913 4.07511

CAGE analysis