Hb_033772_060

Information

Type -
Description -
Location Contig33772: 90745-91437
Sequence    

Annotation

kegg
ID rcu:RCOM_1591900
description hypothetical protein
nr
ID XP_002510272.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9R7H9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35378: 90469-91621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033772_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007894_080 0.0759399911 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000152_880 0.0811558437 - - -
4 Hb_029639_030 0.0837351259 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
5 Hb_000181_220 0.0940815613 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
6 Hb_093218_010 0.0943004857 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
7 Hb_005892_040 0.1000342561 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
8 Hb_004667_030 0.1009888485 - - hypothetical protein VITISV_034568 [Vitis vinifera]
9 Hb_003894_180 0.1043117783 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
10 Hb_001677_090 0.1110657797 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
11 Hb_000714_060 0.1131780206 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
12 Hb_000162_200 0.1138699866 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
13 Hb_007017_100 0.1145151899 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
14 Hb_007101_140 0.1163029532 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
15 Hb_008175_050 0.1165925601 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
16 Hb_010557_020 0.1168499101 - - Mlo protein [Hevea brasiliensis]
17 Hb_004162_320 0.1175376822 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
18 Hb_000951_090 0.117696697 - - Oligopeptide transporter, putative [Ricinus communis]
19 Hb_020805_070 0.1188121725 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
20 Hb_000977_030 0.1199448697 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_033772_060 Hb_033772_060 Hb_007894_080 Hb_007894_080 Hb_033772_060--Hb_007894_080 Hb_000152_880 Hb_000152_880 Hb_033772_060--Hb_000152_880 Hb_029639_030 Hb_029639_030 Hb_033772_060--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_033772_060--Hb_000181_220 Hb_093218_010 Hb_093218_010 Hb_033772_060--Hb_093218_010 Hb_005892_040 Hb_005892_040 Hb_033772_060--Hb_005892_040 Hb_007894_080--Hb_000152_880 Hb_000017_140 Hb_000017_140 Hb_007894_080--Hb_000017_140 Hb_007101_140 Hb_007101_140 Hb_007894_080--Hb_007101_140 Hb_007894_080--Hb_029639_030 Hb_000162_200 Hb_000162_200 Hb_007894_080--Hb_000162_200 Hb_000152_880--Hb_000017_140 Hb_000152_880--Hb_007101_140 Hb_000152_880--Hb_029639_030 Hb_027506_030 Hb_027506_030 Hb_000152_880--Hb_027506_030 Hb_029639_030--Hb_000181_220 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_000181_220--Hb_007101_140 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_000714_060 Hb_000714_060 Hb_093218_010--Hb_000714_060 Hb_032260_060 Hb_032260_060 Hb_093218_010--Hb_032260_060 Hb_001104_020 Hb_001104_020 Hb_093218_010--Hb_001104_020 Hb_000951_090 Hb_000951_090 Hb_093218_010--Hb_000951_090 Hb_093218_010--Hb_005892_040 Hb_003506_010 Hb_003506_010 Hb_005892_040--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_005892_040--Hb_004162_320 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_005892_040--Hb_001405_040 Hb_020805_070 Hb_020805_070 Hb_005892_040--Hb_020805_070 Hb_005892_040--Hb_000977_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.33912 7.74215 12.936 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0644992 0 6.58993 8.79095

CAGE analysis