Hb_000951_090

Information

Type -
Description -
Location Contig951: 156279-161990
Sequence    

Annotation

kegg
ID rcu:RCOM_0818100
description Oligopeptide transporter, putative
nr
ID XP_002518328.1
description Oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q9FME8
description Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=1 SV=1
trembl
ID B9RX59
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_0818100 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63415: 156254-161665 , PASA_asmbl_63416: 161701-161884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000951_090 0.0 - - Oligopeptide transporter, putative [Ricinus communis]
2 Hb_093218_010 0.0901529124 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
3 Hb_001104_020 0.0903797228 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000152_120 0.0927449016 - - alpha-l-fucosidase, putative [Ricinus communis]
5 Hb_029639_030 0.0934901296 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
6 Hb_000714_060 0.0940130134 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
7 Hb_002805_180 0.0993351088 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000732_220 0.1010258603 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
9 Hb_000181_220 0.1094220931 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
10 Hb_005663_090 0.109636755 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
11 Hb_019570_010 0.1096546604 - - lyase, putative [Ricinus communis]
12 Hb_001473_060 0.116885933 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
13 Hb_033772_060 0.117696697 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005144_060 0.1194727519 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
15 Hb_009767_060 0.1201800613 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
16 Hb_032260_060 0.1207138538 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
17 Hb_005168_020 0.1207627055 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
18 Hb_000337_030 0.1215893571 - - amino acid transporter, putative [Ricinus communis]
19 Hb_015001_030 0.1233810329 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
20 Hb_005892_040 0.125162441 - - hypothetical protein JCGZ_02368 [Jatropha curcas]

Gene co-expression network

sample Hb_000951_090 Hb_000951_090 Hb_093218_010 Hb_093218_010 Hb_000951_090--Hb_093218_010 Hb_001104_020 Hb_001104_020 Hb_000951_090--Hb_001104_020 Hb_000152_120 Hb_000152_120 Hb_000951_090--Hb_000152_120 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_000714_060 Hb_000714_060 Hb_000951_090--Hb_000714_060 Hb_002805_180 Hb_002805_180 Hb_000951_090--Hb_002805_180 Hb_093218_010--Hb_000714_060 Hb_032260_060 Hb_032260_060 Hb_093218_010--Hb_032260_060 Hb_093218_010--Hb_001104_020 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_093218_010--Hb_005892_040 Hb_000732_220 Hb_000732_220 Hb_001104_020--Hb_000732_220 Hb_001104_020--Hb_000152_120 Hb_001104_020--Hb_005892_040 Hb_019570_010 Hb_019570_010 Hb_001104_020--Hb_019570_010 Hb_001244_070 Hb_001244_070 Hb_000152_120--Hb_001244_070 Hb_000152_120--Hb_000732_220 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070 Hb_000337_030 Hb_000337_030 Hb_000152_120--Hb_000337_030 Hb_000181_220 Hb_000181_220 Hb_029639_030--Hb_000181_220 Hb_000152_880 Hb_000152_880 Hb_029639_030--Hb_000152_880 Hb_029639_030--Hb_033772_060 Hb_007894_080 Hb_007894_080 Hb_029639_030--Hb_007894_080 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_000714_060--Hb_032260_060 Hb_005731_070 Hb_005731_070 Hb_000714_060--Hb_005731_070 Hb_001473_060 Hb_001473_060 Hb_000714_060--Hb_001473_060 Hb_000714_060--Hb_001104_020 Hb_000359_180 Hb_000359_180 Hb_002805_180--Hb_000359_180 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_001437_260 Hb_001437_260 Hb_002805_180--Hb_001437_260 Hb_002805_180--Hb_000732_220 Hb_005144_060 Hb_005144_060 Hb_002805_180--Hb_005144_060 Hb_002805_180--Hb_019570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00761049 0.74298 6.84107 7.63988 0.0371017 0.0689785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0172709 0.0407711 0.0777584 4.72147 4.88435

CAGE analysis