Hb_000359_180

Information

Type -
Description -
Location Contig359: 193948-196347
Sequence    

Annotation

kegg
ID rcu:RCOM_0695220
description hypothetical protein
nr
ID XP_002526646.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0WPS2
description Cytochrome b561 domain-containing protein At4g18260 OS=Arabidopsis thaliana GN=At4g18260 PE=2 SV=1
trembl
ID B9SKX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0695220 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561 domain-containing protein at4g18260-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37057: 194055-196192
cDNA
(Sanger)
(ID:Location)		 021_A06.ab1: 194335-196192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002805_180 0.0806393548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000732_220 0.0908304179 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
4 Hb_001310_060 0.0914826473 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_000077_300 0.0991070658 - - PREDICTED: expansin-B3-like [Jatropha curcas]
6 Hb_004832_010 0.0999176175 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004592_010 0.1006225508 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
8 Hb_002700_030 0.1039735325 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
9 Hb_019570_010 0.1040833752 - - lyase, putative [Ricinus communis]
10 Hb_002045_010 0.1041918003 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
11 Hb_000739_170 0.1065827665 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
12 Hb_001104_020 0.1072431129 - - DNA binding protein, putative [Ricinus communis]
13 Hb_080147_070 0.1082126359 - - Rop5 [Hevea brasiliensis]
14 Hb_001284_070 0.1083312004 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000941_010 0.1104848807 - - hypothetical protein RCOM_0504460 [Ricinus communis]
16 Hb_001524_120 0.1165234823 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
17 Hb_001437_260 0.117593005 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
18 Hb_001999_160 0.1208185818 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
19 Hb_000024_150 0.1280083664 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
20 Hb_005144_060 0.1293989461 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000359_180 Hb_000359_180 Hb_002805_180 Hb_002805_180 Hb_000359_180--Hb_002805_180 Hb_000732_220 Hb_000732_220 Hb_000359_180--Hb_000732_220 Hb_001310_060 Hb_001310_060 Hb_000359_180--Hb_001310_060 Hb_000077_300 Hb_000077_300 Hb_000359_180--Hb_000077_300 Hb_004832_010 Hb_004832_010 Hb_000359_180--Hb_004832_010 Hb_004592_010 Hb_004592_010 Hb_000359_180--Hb_004592_010 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_001437_260 Hb_001437_260 Hb_002805_180--Hb_001437_260 Hb_002805_180--Hb_000732_220 Hb_005144_060 Hb_005144_060 Hb_002805_180--Hb_005144_060 Hb_019570_010 Hb_019570_010 Hb_002805_180--Hb_019570_010 Hb_001104_020 Hb_001104_020 Hb_000732_220--Hb_001104_020 Hb_000732_220--Hb_019570_010 Hb_000152_120 Hb_000152_120 Hb_000732_220--Hb_000152_120 Hb_000732_220--Hb_004592_010 Hb_001284_070 Hb_001284_070 Hb_001310_060--Hb_001284_070 Hb_080147_070 Hb_080147_070 Hb_001310_060--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001310_060--Hb_004607_020 Hb_000205_180 Hb_000205_180 Hb_001310_060--Hb_000205_180 Hb_002700_030 Hb_002700_030 Hb_001310_060--Hb_002700_030 Hb_001310_060--Hb_000077_300 Hb_002757_010 Hb_002757_010 Hb_000077_300--Hb_002757_010 Hb_000077_300--Hb_002700_030 Hb_003902_070 Hb_003902_070 Hb_000077_300--Hb_003902_070 Hb_000077_300--Hb_080147_070 Hb_000077_300--Hb_000205_180 Hb_004832_010--Hb_001310_060 Hb_004832_010--Hb_019570_010 Hb_001500_080 Hb_001500_080 Hb_004832_010--Hb_001500_080 Hb_004446_060 Hb_004446_060 Hb_004832_010--Hb_004446_060 Hb_004832_010--Hb_001437_260 Hb_004592_010--Hb_019570_010 Hb_003666_070 Hb_003666_070 Hb_004592_010--Hb_003666_070 Hb_005730_110 Hb_005730_110 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248364 2.02392 35.5254 23.2738 0.141871 0.0824845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.134913 0.0625911 12.7388 11.3476

CAGE analysis