Hb_004607_020

Information

Type -
Description -
Location Contig4607: 12499-18094
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20350g
description POPTRDRAFT_414020; hypothetical protein
nr
ID XP_012089982.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
swissprot
ID Q8L649
description E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1
trembl
ID A0A067JGZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25909 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin ligase big brother-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43699: 12794-17090 , PASA_asmbl_43700: 17446-18110 , PASA_asmbl_43701: 17459-18108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_020 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
2 Hb_001284_070 0.0782373976 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001310_060 0.0806442505 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_080147_070 0.0841515339 - - Rop5 [Hevea brasiliensis]
5 Hb_003626_020 0.0873387289 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
6 Hb_002700_030 0.0909643306 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
7 Hb_001369_550 0.0997825125 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_001649_050 0.1012619919 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
9 Hb_000205_180 0.1018167202 - - lipoxygenase, putative [Ricinus communis]
10 Hb_004316_080 0.1022367589 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
11 Hb_005306_030 0.1068332369 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
12 Hb_000343_010 0.1090099345 - - F3F9.11 [Arabidopsis thaliana]
13 Hb_027337_010 0.1108480342 - - Potassium transporter, putative [Ricinus communis]
14 Hb_002081_060 0.1121503614 - - cyclin d, putative [Ricinus communis]
15 Hb_000260_670 0.1178602066 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
16 Hb_011849_030 0.1179606792 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005743_010 0.1181656865 - - RING/U-box superfamily protein, putative [Theobroma cacao]
18 Hb_000343_020 0.1196952542 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
19 Hb_000077_300 0.1204075322 - - PREDICTED: expansin-B3-like [Jatropha curcas]
20 Hb_000035_150 0.1235005438 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]

Gene co-expression network

sample Hb_004607_020 Hb_004607_020 Hb_001284_070 Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_001310_060 Hb_001310_060 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_002700_030 Hb_002700_030 Hb_004607_020--Hb_002700_030 Hb_001369_550 Hb_001369_550 Hb_004607_020--Hb_001369_550 Hb_001284_070--Hb_001310_060 Hb_001284_070--Hb_080147_070 Hb_001284_070--Hb_002700_030 Hb_000205_180 Hb_000205_180 Hb_001284_070--Hb_000205_180 Hb_001284_070--Hb_001369_550 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_000205_180 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_080147_070--Hb_002700_030 Hb_000260_670 Hb_000260_670 Hb_080147_070--Hb_000260_670 Hb_080147_070--Hb_001369_550 Hb_003626_020--Hb_000205_180 Hb_003992_130 Hb_003992_130 Hb_003626_020--Hb_003992_130 Hb_000035_150 Hb_000035_150 Hb_003626_020--Hb_000035_150 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_003626_020--Hb_001310_060 Hb_002700_030--Hb_000077_300 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_001369_550--Hb_000205_180 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0807671 0.658616 8.07718 3.02451 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.07435 1.18747

CAGE analysis