Hb_080147_070

Information

Type -
Description -
Location Contig80147: 44147-48031
Sequence    

Annotation

kegg
ID rcu:RCOM_1052070
description rac gtpase, putative (EC:3.1.4.12)
nr
ID AGL44368.1
description Rop5 [Hevea brasiliensis]
swissprot
ID Q68Y52
description Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1
trembl
ID T1RM48
description Rop5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein arac7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58815: 45041-47962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_070 0.0 - - Rop5 [Hevea brasiliensis]
2 Hb_001284_070 0.0650785725 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002700_030 0.0674880162 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_000260_670 0.0708131165 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
5 Hb_001369_550 0.0751395657 - - 21 kDa protein precursor, putative [Ricinus communis]
6 Hb_001310_060 0.0795965503 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_004607_020 0.0841515339 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_000272_010 0.0948765653 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
9 Hb_000077_300 0.0973367087 - - PREDICTED: expansin-B3-like [Jatropha curcas]
10 Hb_000205_180 0.1027347786 - - lipoxygenase, putative [Ricinus communis]
11 Hb_003360_010 0.1032804907 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
12 Hb_000030_080 0.1070417253 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
13 Hb_000359_180 0.1082126359 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000954_040 0.1089851655 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
15 Hb_005306_030 0.109070764 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
16 Hb_001366_380 0.1138901176 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
17 Hb_006316_090 0.1167920375 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_001263_030 0.1171959548 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
19 Hb_001454_270 0.1193989763 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
20 Hb_000103_460 0.1211651151 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_080147_070 Hb_080147_070 Hb_001284_070 Hb_001284_070 Hb_080147_070--Hb_001284_070 Hb_002700_030 Hb_002700_030 Hb_080147_070--Hb_002700_030 Hb_000260_670 Hb_000260_670 Hb_080147_070--Hb_000260_670 Hb_001369_550 Hb_001369_550 Hb_080147_070--Hb_001369_550 Hb_001310_060 Hb_001310_060 Hb_080147_070--Hb_001310_060 Hb_004607_020 Hb_004607_020 Hb_080147_070--Hb_004607_020 Hb_001284_070--Hb_001310_060 Hb_001284_070--Hb_004607_020 Hb_001284_070--Hb_002700_030 Hb_000205_180 Hb_000205_180 Hb_001284_070--Hb_000205_180 Hb_001284_070--Hb_001369_550 Hb_000077_300 Hb_000077_300 Hb_002700_030--Hb_000077_300 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_002700_030--Hb_001310_060 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_001366_380 Hb_001366_380 Hb_000260_670--Hb_001366_380 Hb_000260_670--Hb_002700_030 Hb_001369_550--Hb_000205_180 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_000205_180 Hb_001310_060--Hb_000077_300 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1072 2.20612 43.3425 21.2766 0.0269042 0.141529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.061564 0 0 14.4087 6.45661

CAGE analysis