Hb_000954_040

Information

Type -
Description -
Location Contig954: 96289-98702
Sequence    

Annotation

kegg
ID cic:CICLE_v10011857mg
description hypothetical protein
nr
ID XP_012076054.1
description PREDICTED: metal tolerance protein 4 [Jatropha curcas]
swissprot
ID Q10PP8
description Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1
trembl
ID A0A067KHJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12766 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63484: 96007-98677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000954_040 0.0 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
2 Hb_000260_670 0.0756608366 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
3 Hb_011861_040 0.0925255994 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
4 Hb_001369_550 0.1026447398 - - 21 kDa protein precursor, putative [Ricinus communis]
5 Hb_080147_070 0.1089851655 - - Rop5 [Hevea brasiliensis]
6 Hb_002700_030 0.1094284036 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
7 Hb_001999_160 0.1126560508 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
8 Hb_033041_010 0.1128668981 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
9 Hb_005183_150 0.1131454596 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
10 Hb_000205_180 0.1160170028 - - lipoxygenase, putative [Ricinus communis]
11 Hb_003360_010 0.1179264509 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
12 Hb_001284_070 0.1211847532 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002081_060 0.1221832401 - - cyclin d, putative [Ricinus communis]
14 Hb_000334_120 0.1227117663 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
15 Hb_006316_090 0.125371741 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_004607_020 0.1254636723 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
17 Hb_000958_040 0.1274100624 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
18 Hb_001649_050 0.1277058576 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
19 Hb_001366_380 0.1279181389 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
20 Hb_000343_010 0.1324734268 - - F3F9.11 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_000954_040 Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_000954_040--Hb_000260_670 Hb_011861_040 Hb_011861_040 Hb_000954_040--Hb_011861_040 Hb_001369_550 Hb_001369_550 Hb_000954_040--Hb_001369_550 Hb_080147_070 Hb_080147_070 Hb_000954_040--Hb_080147_070 Hb_002700_030 Hb_002700_030 Hb_000954_040--Hb_002700_030 Hb_001999_160 Hb_001999_160 Hb_000954_040--Hb_001999_160 Hb_000260_670--Hb_080147_070 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_001366_380 Hb_001366_380 Hb_000260_670--Hb_001366_380 Hb_000260_670--Hb_002700_030 Hb_002871_130 Hb_002871_130 Hb_011861_040--Hb_002871_130 Hb_011861_040--Hb_000260_670 Hb_001649_050 Hb_001649_050 Hb_011861_040--Hb_001649_050 Hb_011861_040--Hb_003360_010 Hb_011861_040--Hb_080147_070 Hb_001369_550--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_001369_550--Hb_000205_180 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030 Hb_001284_070 Hb_001284_070 Hb_001369_550--Hb_001284_070 Hb_080147_070--Hb_001284_070 Hb_080147_070--Hb_002700_030 Hb_001310_060 Hb_001310_060 Hb_080147_070--Hb_001310_060 Hb_004607_020 Hb_004607_020 Hb_080147_070--Hb_004607_020 Hb_000077_300 Hb_000077_300 Hb_002700_030--Hb_000077_300 Hb_002700_030--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_002700_030--Hb_001310_060 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_005542_150 Hb_005542_150 Hb_001999_160--Hb_005542_150 Hb_002081_060 Hb_002081_060 Hb_001999_160--Hb_002081_060 Hb_001999_160--Hb_000260_670 Hb_001999_160--Hb_002700_030 Hb_003228_050 Hb_003228_050 Hb_001999_160--Hb_003228_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0684672 0.265804 9.99214 4.00103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104338 0.136801 0.102421 2.87616 1.25408

CAGE analysis