Hb_000260_670

Information

Type -
Description -
Location Contig260: 504576-515531
Sequence    

Annotation

kegg
ID rcu:RCOM_1324440
description ATP binding protein, putative (EC:2.7.11.17)
nr
ID XP_012090928.1
description PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
swissprot
ID Q2QAV0
description Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana GN=TIO PE=1 SV=1
trembl
ID A0A067JQI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00576 PE=4 SV=1
Gene Ontology
ID GO:0004683
description serine threonine-protein kinase tio isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27044: 504425-507247 , PASA_asmbl_27045: 507628-509311 , PASA_asmbl_27046: 510255-512744 , PASA_asmbl_27047: 513187-515468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_670 0.0 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
2 Hb_080147_070 0.0708131165 - - Rop5 [Hevea brasiliensis]
3 Hb_000954_040 0.0756608366 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
4 Hb_000272_010 0.0771930766 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
5 Hb_003360_010 0.083983672 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
6 Hb_001366_380 0.0873389932 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
7 Hb_002700_030 0.0902820818 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
8 Hb_001369_550 0.0931999548 - - 21 kDa protein precursor, putative [Ricinus communis]
9 Hb_000030_080 0.1037081558 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
10 Hb_005183_150 0.1070475849 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
11 Hb_005306_030 0.1093347057 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
12 Hb_001263_030 0.1097139571 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_001284_070 0.1100380636 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001649_050 0.1101944101 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
15 Hb_001999_160 0.1135883499 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
16 Hb_001076_010 0.1140724736 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
17 Hb_001454_270 0.1141885986 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
18 Hb_011861_040 0.1144994274 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
19 Hb_005542_150 0.1149222429 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
20 Hb_006316_090 0.1171806653 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_670 Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000260_670--Hb_080147_070 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_001366_380 Hb_001366_380 Hb_000260_670--Hb_001366_380 Hb_002700_030 Hb_002700_030 Hb_000260_670--Hb_002700_030 Hb_001284_070 Hb_001284_070 Hb_080147_070--Hb_001284_070 Hb_080147_070--Hb_002700_030 Hb_001369_550 Hb_001369_550 Hb_080147_070--Hb_001369_550 Hb_001310_060 Hb_001310_060 Hb_080147_070--Hb_001310_060 Hb_004607_020 Hb_004607_020 Hb_080147_070--Hb_004607_020 Hb_011861_040 Hb_011861_040 Hb_000954_040--Hb_011861_040 Hb_000954_040--Hb_001369_550 Hb_000954_040--Hb_080147_070 Hb_000954_040--Hb_002700_030 Hb_001999_160 Hb_001999_160 Hb_000954_040--Hb_001999_160 Hb_000272_010--Hb_001366_380 Hb_000272_010--Hb_080147_070 Hb_000535_040 Hb_000535_040 Hb_000272_010--Hb_000535_040 Hb_000343_220 Hb_000343_220 Hb_000272_010--Hb_000343_220 Hb_006711_040 Hb_006711_040 Hb_000272_010--Hb_006711_040 Hb_024682_030 Hb_024682_030 Hb_003360_010--Hb_024682_030 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_124677_050 Hb_124677_050 Hb_003360_010--Hb_124677_050 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_003360_010--Hb_005183_150 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_005306_030 Hb_005306_030 Hb_001366_380--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001366_380--Hb_001649_050 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_000077_300 Hb_000077_300 Hb_002700_030--Hb_000077_300 Hb_002700_030--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_002700_030--Hb_001310_060 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246406 0.211086 5.26945 2.74688 0.00421388 0.00409562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.020401 0.0401377 0.0154282 1.77056 0.550899

CAGE analysis