Hb_024682_030

Information

Type -
Description -
Location Contig24682: 31114-37005
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12700g
description hypothetical protein
nr
ID XP_012088681.1
description PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
swissprot
ID Q2R482
description DNA replication licensing factor MCM2 OS=Oryza sativa subsp. japonica GN=MCM2 PE=2 SV=1
trembl
ID U5GPA0
description DNA helicase OS=Populus trichocarpa GN=POPTR_0001s12700g PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna replication licensing factor mcm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25628: 31091-36812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024682_030 0.0 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
2 Hb_003360_010 0.0817926 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
3 Hb_000592_100 0.090510922 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
4 Hb_000431_100 0.0965568936 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
5 Hb_001524_120 0.0988329655 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
6 Hb_000024_150 0.0999719437 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
7 Hb_001782_100 0.1065963236 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_000417_140 0.1188089238 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
9 Hb_004007_130 0.1197828859 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
10 Hb_000010_440 0.1205245743 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
11 Hb_000046_240 0.1222824518 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
12 Hb_129996_010 0.1223381693 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
13 Hb_000260_670 0.1233134608 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
14 Hb_005183_150 0.1280098648 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
15 Hb_000862_050 0.1280930128 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
16 Hb_007590_110 0.1292690337 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
17 Hb_002284_260 0.1296245888 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
18 Hb_008725_100 0.1307139949 - - PREDICTED: histone H1-like [Jatropha curcas]
19 Hb_000522_160 0.1312515893 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_080147_070 0.132586295 - - Rop5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_024682_030 Hb_024682_030 Hb_003360_010 Hb_003360_010 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_003360_010--Hb_000431_100 Hb_124677_050 Hb_124677_050 Hb_003360_010--Hb_124677_050 Hb_003360_010--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_003360_010--Hb_005183_150 Hb_000592_100--Hb_000024_150 Hb_008725_100 Hb_008725_100 Hb_000592_100--Hb_008725_100 Hb_000862_050 Hb_000862_050 Hb_000592_100--Hb_000862_050 Hb_000010_440 Hb_000010_440 Hb_000592_100--Hb_000010_440 Hb_010672_010 Hb_010672_010 Hb_000592_100--Hb_010672_010 Hb_000431_100--Hb_001524_120 Hb_002276_250 Hb_002276_250 Hb_000431_100--Hb_002276_250 Hb_001348_100 Hb_001348_100 Hb_000431_100--Hb_001348_100 Hb_000046_240 Hb_000046_240 Hb_000431_100--Hb_000046_240 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_001524_120--Hb_005183_150 Hb_003228_050 Hb_003228_050 Hb_001524_120--Hb_003228_050 Hb_000024_150--Hb_000010_440 Hb_000941_010 Hb_000941_010 Hb_000024_150--Hb_000941_010 Hb_000365_430 Hb_000365_430 Hb_000024_150--Hb_000365_430 Hb_002817_030 Hb_002817_030 Hb_000024_150--Hb_002817_030 Hb_006351_030 Hb_006351_030 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126458 1.93112 14.8655 11.2242 0.104822 0.135276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.01252 0.206904 0.132216 4.72096 2.25461

CAGE analysis