Hb_000152_590

Information

Type -
Description -
Location Contig152: 498499-499095
Sequence    

Annotation

kegg
ID rcu:RCOM_1500140
description 21 kDa protein precursor, putative
nr
ID XP_012090420.1
description PREDICTED: 21 kDa protein [Jatropha curcas]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067JS84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26240 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_D14.ab1: 498458-499212 , 008_J16.ab1: 498458-499154 , 014_I05.ab1: 498463-499206 , 030_O23.ab1: 498458-499238 , 031_E02.ab1: 498463-499233 , 048_P20.ab1: 498458-499221

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_590 0.0 - - PREDICTED: 21 kDa protein [Jatropha curcas]
2 Hb_010672_010 0.0482900438 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
3 Hb_001782_100 0.0922642676 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_133508_020 0.0930751064 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
5 Hb_006351_030 0.0942043869 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
6 Hb_006916_120 0.0967797636 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
7 Hb_146901_020 0.0979571325 - - -
8 Hb_027556_060 0.1042009517 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
9 Hb_001247_090 0.107028498 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
10 Hb_000592_100 0.1096602246 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
11 Hb_000098_270 0.1129232555 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
12 Hb_008725_100 0.1161301006 - - PREDICTED: histone H1-like [Jatropha curcas]
13 Hb_000339_050 0.117367489 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
14 Hb_000805_270 0.1189082694 - - PREDICTED: expansin-A4 [Gossypium raimondii]
15 Hb_001025_100 0.1260123144 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
16 Hb_007126_010 0.1303070435 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_000024_150 0.1332512148 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
18 Hb_000631_100 0.1346447735 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
19 Hb_003216_140 0.1350438861 - - F-box protein SNE, putative [Ricinus communis]
20 Hb_000975_090 0.1364265862 - - Zeamatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_590 Hb_000152_590 Hb_010672_010 Hb_010672_010 Hb_000152_590--Hb_010672_010 Hb_001782_100 Hb_001782_100 Hb_000152_590--Hb_001782_100 Hb_133508_020 Hb_133508_020 Hb_000152_590--Hb_133508_020 Hb_006351_030 Hb_006351_030 Hb_000152_590--Hb_006351_030 Hb_006916_120 Hb_006916_120 Hb_000152_590--Hb_006916_120 Hb_146901_020 Hb_146901_020 Hb_000152_590--Hb_146901_020 Hb_010672_010--Hb_146901_020 Hb_000592_100 Hb_000592_100 Hb_010672_010--Hb_000592_100 Hb_000098_270 Hb_000098_270 Hb_010672_010--Hb_000098_270 Hb_010672_010--Hb_001782_100 Hb_020025_030 Hb_020025_030 Hb_010672_010--Hb_020025_030 Hb_001782_100--Hb_006351_030 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_024682_030 Hb_024682_030 Hb_001782_100--Hb_024682_030 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040 Hb_133508_020--Hb_006916_120 Hb_000975_090 Hb_000975_090 Hb_133508_020--Hb_000975_090 Hb_185830_090 Hb_185830_090 Hb_133508_020--Hb_185830_090 Hb_133508_020--Hb_010672_010 Hb_096878_010 Hb_096878_010 Hb_133508_020--Hb_096878_010 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_006351_030--Hb_000098_270 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_006351_030--Hb_006916_120 Hb_006916_120--Hb_000975_090 Hb_000631_100 Hb_000631_100 Hb_006916_120--Hb_000631_100 Hb_087427_010 Hb_087427_010 Hb_006916_120--Hb_087427_010 Hb_027556_060 Hb_027556_060 Hb_146901_020--Hb_027556_060 Hb_013358_030 Hb_013358_030 Hb_146901_020--Hb_013358_030 Hb_003875_040 Hb_003875_040 Hb_146901_020--Hb_003875_040 Hb_003216_140 Hb_003216_140 Hb_146901_020--Hb_003216_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230822 14.2748 71.7654 93.6648 0.520256 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 33.6834 7.57545

CAGE analysis