Hb_020025_030

Information

Type transcription factor
Description TF Family: PHD
Location Contig20025: 24082-25321
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39150g
description POPTRDRAFT_798206; PHD finger family protein
nr
ID XP_011045558.1
description PREDICTED: protein Jade-1 [Populus euphratica]
swissprot
ID Q803A0
description Protein Jade-1 OS=Danio rerio GN=jade1 PE=2 SV=1
trembl
ID B9GHE7
description PHD finger family protein OS=Populus trichocarpa GN=POPTR_0001s39150g PE=4 SV=1
Gene Ontology
ID GO:0046872
description protein jade-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20276: 23795-24510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020025_030 0.0 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
2 Hb_000140_200 0.0341719487 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
3 Hb_001263_030 0.0821241591 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
4 Hb_000094_230 0.0821583223 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
5 Hb_004531_060 0.0839475163 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
6 Hb_003656_080 0.0857141314 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
7 Hb_000977_190 0.0921508474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005332_030 0.0936535303 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006588_100 0.0954140093 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010672_010 0.1088325185 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
11 Hb_089140_070 0.1090142048 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
12 Hb_185666_010 0.1173559362 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
13 Hb_001950_090 0.1190576436 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
14 Hb_006810_040 0.1191537194 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_001052_020 0.1196215902 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
16 Hb_159809_040 0.1209804694 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000979_070 0.1227643192 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
18 Hb_002686_320 0.1288188847 - - syntaxin, putative [Ricinus communis]
19 Hb_000098_270 0.1298723157 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
20 Hb_000535_040 0.1325643816 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]

Gene co-expression network

sample Hb_020025_030 Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_020025_030--Hb_000140_200 Hb_001263_030 Hb_001263_030 Hb_020025_030--Hb_001263_030 Hb_000094_230 Hb_000094_230 Hb_020025_030--Hb_000094_230 Hb_004531_060 Hb_004531_060 Hb_020025_030--Hb_004531_060 Hb_003656_080 Hb_003656_080 Hb_020025_030--Hb_003656_080 Hb_000977_190 Hb_000977_190 Hb_020025_030--Hb_000977_190 Hb_006588_100 Hb_006588_100 Hb_000140_200--Hb_006588_100 Hb_000140_200--Hb_000094_230 Hb_000140_200--Hb_001263_030 Hb_000140_200--Hb_003656_080 Hb_000140_200--Hb_000977_190 Hb_000030_080 Hb_000030_080 Hb_001263_030--Hb_000030_080 Hb_001263_030--Hb_004531_060 Hb_005332_030 Hb_005332_030 Hb_001263_030--Hb_005332_030 Hb_001454_270 Hb_001454_270 Hb_001263_030--Hb_001454_270 Hb_000979_070 Hb_000979_070 Hb_000094_230--Hb_000979_070 Hb_000535_040 Hb_000535_040 Hb_000094_230--Hb_000535_040 Hb_000094_230--Hb_001263_030 Hb_000094_230--Hb_004531_060 Hb_004531_060--Hb_003656_080 Hb_004531_060--Hb_000140_200 Hb_004531_060--Hb_006588_100 Hb_001950_090 Hb_001950_090 Hb_004531_060--Hb_001950_090 Hb_003656_080--Hb_006588_100 Hb_003656_080--Hb_005332_030 Hb_003656_080--Hb_001950_090 Hb_002686_320 Hb_002686_320 Hb_000977_190--Hb_002686_320 Hb_000977_190--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000977_190--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_000977_190--Hb_000538_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0464919 1.25939 1.3209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.376231 0.0692017

CAGE analysis