Hb_005332_030

Information

Type -
Description -
Location Contig5332: 51045-53708
Sequence    

Annotation

kegg
ID rcu:RCOM_0530870
description hypothetical protein
nr
ID XP_002526936.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLR7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0530870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47440: 52125-52930 , PASA_asmbl_47441: 53346-53832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_159809_040 0.0738846907 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000977_190 0.0801781727 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000522_160 0.0816413662 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
5 Hb_003656_080 0.0826618557 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
6 Hb_006810_040 0.0844781538 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_001263_030 0.0909845067 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
8 Hb_006588_100 0.0916331331 - - conserved hypothetical protein [Ricinus communis]
9 Hb_020025_030 0.0936535303 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
10 Hb_002686_320 0.0945510675 - - syntaxin, putative [Ricinus communis]
11 Hb_001699_270 0.0988339579 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
12 Hb_006693_010 0.0988788582 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
13 Hb_001950_090 0.100274477 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
14 Hb_000317_120 0.1004027688 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
15 Hb_000140_200 0.1031870834 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
16 Hb_004531_060 0.103583549 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
17 Hb_000538_290 0.1040784936 - - hypothetical protein RCOM_0303940 [Ricinus communis]
18 Hb_089140_070 0.1060545154 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
19 Hb_001971_040 0.106757996 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
20 Hb_000187_050 0.1090967739 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]

Gene co-expression network

sample Hb_005332_030 Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_005332_030--Hb_159809_040 Hb_000977_190 Hb_000977_190 Hb_005332_030--Hb_000977_190 Hb_000522_160 Hb_000522_160 Hb_005332_030--Hb_000522_160 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_006810_040 Hb_006810_040 Hb_005332_030--Hb_006810_040 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030 Hb_159809_040--Hb_006810_040 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_159809_040--Hb_000522_160 Hb_159809_040--Hb_000977_190 Hb_002686_320 Hb_002686_320 Hb_000977_190--Hb_002686_320 Hb_000538_290 Hb_000538_290 Hb_000977_190--Hb_000538_290 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030 Hb_000522_160--Hb_006810_040 Hb_006693_010 Hb_006693_010 Hb_000522_160--Hb_006693_010 Hb_001971_040 Hb_001971_040 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100 Hb_006588_100 Hb_006588_100 Hb_003656_080--Hb_006588_100 Hb_004531_060 Hb_004531_060 Hb_003656_080--Hb_004531_060 Hb_003656_080--Hb_020025_030 Hb_001950_090 Hb_001950_090 Hb_003656_080--Hb_001950_090 Hb_003656_080--Hb_000140_200 Hb_006810_040--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_000030_080 Hb_000030_080 Hb_001263_030--Hb_000030_080 Hb_001263_030--Hb_004531_060 Hb_001263_030--Hb_020025_030 Hb_001263_030--Hb_000140_200 Hb_001454_270 Hb_001454_270 Hb_001263_030--Hb_001454_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0137606 0.1915 4.89659 4.5606 0 0.0275913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0463315 1.05342 0.515898

CAGE analysis