Hb_000522_160

Information

Type -
Description -
Location Contig522: 137264-141495
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09500g
description POPTRDRAFT_819198; hypothetical protein
nr
ID XP_012087964.1
description PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
swissprot
ID Q9FHD7
description Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1
trembl
ID A0A067JKK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25085 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at5g41260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46847: 137310-141663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_160 0.0 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
2 Hb_006810_040 0.067598483 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_006693_010 0.076679393 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
4 Hb_005332_030 0.0816413662 - - conserved hypothetical protein [Ricinus communis]
5 Hb_159809_040 0.0884168427 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001971_040 0.0888098512 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
7 Hb_001348_100 0.0894749667 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
8 Hb_000345_230 0.0896205168 - - -
9 Hb_003935_040 0.0993328311 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
10 Hb_000576_140 0.100019551 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
11 Hb_004055_090 0.1001101005 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
12 Hb_000977_190 0.1017038554 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000538_290 0.1060854901 - - hypothetical protein RCOM_0303940 [Ricinus communis]
14 Hb_002686_320 0.1091603714 - - syntaxin, putative [Ricinus communis]
15 Hb_000359_100 0.1094718669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002028_270 0.112317634 - - Pectinesterase-1 precursor, putative [Ricinus communis]
17 Hb_000020_050 0.1134733745 - - PREDICTED: expansin-A6 [Jatropha curcas]
18 Hb_089140_070 0.1148736387 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
19 Hb_000431_100 0.1163875659 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
20 Hb_001524_120 0.1164007601 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000522_160 Hb_000522_160 Hb_006810_040 Hb_006810_040 Hb_000522_160--Hb_006810_040 Hb_006693_010 Hb_006693_010 Hb_000522_160--Hb_006693_010 Hb_005332_030 Hb_005332_030 Hb_000522_160--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000522_160--Hb_159809_040 Hb_001971_040 Hb_001971_040 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100 Hb_006810_040--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_006810_040--Hb_159809_040 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_006810_040--Hb_005332_030 Hb_006693_010--Hb_001971_040 Hb_000020_050 Hb_000020_050 Hb_006693_010--Hb_000020_050 Hb_006693_010--Hb_001348_100 Hb_006693_010--Hb_006810_040 Hb_006693_010--Hb_005332_030 Hb_005332_030--Hb_159809_040 Hb_000977_190 Hb_000977_190 Hb_005332_030--Hb_000977_190 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_159809_040--Hb_000977_190 Hb_001971_040--Hb_002028_270 Hb_001971_040--Hb_089140_070 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_001971_040--Hb_000020_050 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_001348_100--Hb_006810_040 Hb_000297_210 Hb_000297_210 Hb_001348_100--Hb_000297_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193239 1.11608 17.194 17.911 0.0556019 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0413632 0.117187 3.50188 3.04622

CAGE analysis