Hb_010080_050

Information

Type -
Description -
Location Contig10080: 66701-69797
Sequence    

Annotation

kegg
ID rcu:RCOM_1600670
description hypothetical protein
nr
ID XP_012073678.1
description PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00504: 67461-69306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_050 0.0 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
2 Hb_002307_150 0.0648103132 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
3 Hb_005211_170 0.0692412484 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
4 Hb_000445_260 0.0705905126 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
5 Hb_001971_040 0.0806368178 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
6 Hb_001856_210 0.08431547 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
7 Hb_089140_070 0.0905326456 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
8 Hb_003464_010 0.0944682151 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002028_270 0.0951042765 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_009113_020 0.0965926035 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
11 Hb_004319_010 0.1008155423 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
12 Hb_012092_040 0.1036079516 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
13 Hb_000333_140 0.1082798738 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_001141_440 0.1089272216 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
15 Hb_006810_040 0.1102357861 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_000679_290 0.1102890797 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]
17 Hb_000878_080 0.1154974567 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
18 Hb_011628_010 0.1171748935 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_001136_080 0.1181479202 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
20 Hb_002836_110 0.1212654205 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_010080_050 Hb_010080_050 Hb_002307_150 Hb_002307_150 Hb_010080_050--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_010080_050--Hb_005211_170 Hb_000445_260 Hb_000445_260 Hb_010080_050--Hb_000445_260 Hb_001971_040 Hb_001971_040 Hb_010080_050--Hb_001971_040 Hb_001856_210 Hb_001856_210 Hb_010080_050--Hb_001856_210 Hb_089140_070 Hb_089140_070 Hb_010080_050--Hb_089140_070 Hb_002307_150--Hb_005211_170 Hb_000333_140 Hb_000333_140 Hb_002307_150--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_002307_150--Hb_011628_010 Hb_002307_150--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_002307_150--Hb_002028_270 Hb_005211_170--Hb_000333_140 Hb_005211_170--Hb_000445_260 Hb_000310_040 Hb_000310_040 Hb_005211_170--Hb_000310_040 Hb_005211_170--Hb_011628_010 Hb_000445_260--Hb_001856_210 Hb_003464_010 Hb_003464_010 Hb_000445_260--Hb_003464_010 Hb_000445_260--Hb_002307_150 Hb_000878_080 Hb_000878_080 Hb_000445_260--Hb_000878_080 Hb_006810_040 Hb_006810_040 Hb_001971_040--Hb_006810_040 Hb_001971_040--Hb_002028_270 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_001856_210--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_012092_040 Hb_012092_040 Hb_089140_070--Hb_012092_040 Hb_089140_070--Hb_006810_040 Hb_000390_010 Hb_000390_010 Hb_089140_070--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_089140_070--Hb_000035_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00933833 0.151104 2.93515 4.11298 0.0548859 0.00892533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.238961 0.353347

CAGE analysis