Hb_002307_150

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2307: 101386-102669
Sequence    

Annotation

kegg
ID rcu:RCOM_0909180
description Auxin-responsive protein IAA4, putative
nr
ID XP_012069758.1
description PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
swissprot
ID P32294
description Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1
trembl
ID A0A067KZA4
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_02271 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24248: 101683-103079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_150 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
2 Hb_005211_170 0.0432120704 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
3 Hb_010080_050 0.0648103132 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
4 Hb_000333_140 0.0708305335 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_011628_010 0.0860176378 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_001971_040 0.0900584262 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
7 Hb_002028_270 0.0944340846 - - Pectinesterase-1 precursor, putative [Ricinus communis]
8 Hb_000445_260 0.0960957932 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
9 Hb_001141_440 0.1010663613 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
10 Hb_001856_210 0.1011139324 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
11 Hb_000310_040 0.1015556018 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
12 Hb_001136_080 0.1029174292 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
13 Hb_003464_010 0.1067945971 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004319_010 0.1106755792 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
15 Hb_001709_090 0.1112596643 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
16 Hb_002970_030 0.1120548728 - - conserved hypothetical protein [Ricinus communis]
17 Hb_043552_010 0.1123335556 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
18 Hb_089140_070 0.1125212584 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
19 Hb_007290_040 0.1134430688 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
20 Hb_009252_080 0.1153608599 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002307_150 Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_002307_150--Hb_005211_170 Hb_010080_050 Hb_010080_050 Hb_002307_150--Hb_010080_050 Hb_000333_140 Hb_000333_140 Hb_002307_150--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_002307_150--Hb_011628_010 Hb_001971_040 Hb_001971_040 Hb_002307_150--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_002307_150--Hb_002028_270 Hb_005211_170--Hb_000333_140 Hb_005211_170--Hb_010080_050 Hb_000445_260 Hb_000445_260 Hb_005211_170--Hb_000445_260 Hb_000310_040 Hb_000310_040 Hb_005211_170--Hb_000310_040 Hb_005211_170--Hb_011628_010 Hb_010080_050--Hb_000445_260 Hb_010080_050--Hb_001971_040 Hb_001856_210 Hb_001856_210 Hb_010080_050--Hb_001856_210 Hb_089140_070 Hb_089140_070 Hb_010080_050--Hb_089140_070 Hb_000333_140--Hb_011628_010 Hb_001136_080 Hb_001136_080 Hb_000333_140--Hb_001136_080 Hb_015292_020 Hb_015292_020 Hb_000333_140--Hb_015292_020 Hb_000333_140--Hb_000310_040 Hb_011628_010--Hb_001136_080 Hb_009367_070 Hb_009367_070 Hb_011628_010--Hb_009367_070 Hb_039075_010 Hb_039075_010 Hb_011628_010--Hb_039075_010 Hb_006810_040 Hb_006810_040 Hb_001971_040--Hb_006810_040 Hb_001971_040--Hb_002028_270 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_002028_270--Hb_006810_040 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0800159 2.72034 26.6971 44.6736 0.23479 0.155969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.128481 0 2.35314 3.55432

CAGE analysis