Hb_001971_040

Information

Type -
Description -
Location Contig1971: 54668-59231
Sequence    

Annotation

kegg
ID cit:102611632
description beta-glucosidase 44-like
nr
ID XP_012068429.1
description PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
swissprot
ID Q9LV33
description Beta-glucosidase 44 OS=Arabidopsis thaliana GN=BGLU44 PE=2 SV=1
trembl
ID A0A067LAJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03615 PE=3 SV=1
Gene Ontology
ID GO:0008422
description beta-glucosidase 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19801: 54582-59307
cDNA
(Sanger)
(ID:Location)		 005_G10.ab1: 56201-59193 , 014_O22.ab1: 56603-59307 , 032_A17.ab1: 56296-59241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_040 0.0 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
2 Hb_006810_040 0.0610364902 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_002028_270 0.0666732646 - - Pectinesterase-1 precursor, putative [Ricinus communis]
4 Hb_089140_070 0.0770438005 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
5 Hb_006693_010 0.0787861069 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
6 Hb_010080_050 0.0806368178 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
7 Hb_000020_050 0.0833821309 - - PREDICTED: expansin-A6 [Jatropha curcas]
8 Hb_000522_160 0.0888098512 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_002307_150 0.0900584262 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
10 Hb_001141_440 0.0952209288 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
11 Hb_005211_170 0.095337932 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
12 Hb_000345_230 0.0956841071 - - -
13 Hb_000538_290 0.095794284 - - hypothetical protein RCOM_0303940 [Ricinus communis]
14 Hb_002686_320 0.09606228 - - syntaxin, putative [Ricinus communis]
15 Hb_009113_020 0.0972877351 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
16 Hb_000359_100 0.098549929 - - conserved hypothetical protein [Ricinus communis]
17 Hb_159809_040 0.1041103684 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000390_010 0.1043967833 - - PREDICTED: protein CDI [Jatropha curcas]
19 Hb_001950_090 0.1057343133 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
20 Hb_001709_090 0.1059939871 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_001971_040 Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_006810_040--Hb_002028_270 Hb_159809_040 Hb_159809_040 Hb_006810_040--Hb_159809_040 Hb_006810_040--Hb_089140_070 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020 Hb_012092_040 Hb_012092_040 Hb_089140_070--Hb_012092_040 Hb_089140_070--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_089140_070--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_089140_070--Hb_000035_230 Hb_006693_010--Hb_000522_160 Hb_006693_010--Hb_000020_050 Hb_001348_100 Hb_001348_100 Hb_006693_010--Hb_001348_100 Hb_006693_010--Hb_006810_040 Hb_006693_010--Hb_005332_030 Hb_002307_150 Hb_002307_150 Hb_010080_050--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_010080_050--Hb_005211_170 Hb_000445_260 Hb_000445_260 Hb_010080_050--Hb_000445_260 Hb_001856_210 Hb_001856_210 Hb_010080_050--Hb_001856_210 Hb_003935_040 Hb_003935_040 Hb_000020_050--Hb_003935_040 Hb_000345_230 Hb_000345_230 Hb_000020_050--Hb_000345_230 Hb_000020_050--Hb_001348_100 Hb_001141_440 Hb_001141_440 Hb_000020_050--Hb_001141_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25763 4.77283 72.2995 88.1356 0.192064 0.271693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.264743 0.145807 0.039334 9.56074 9.68402

CAGE analysis