Hb_000345_230

Information

Type -
Description -
Location Contig345: 225995-227278
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35999: 224579-226832 , PASA_asmbl_36000: 226874-227008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_230 0.0 - - -
2 Hb_159809_040 0.0817243841 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003935_040 0.0833949751 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
4 Hb_009252_080 0.0881682655 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
5 Hb_001141_440 0.0885585095 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
6 Hb_001709_090 0.0894587134 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
7 Hb_000522_160 0.0896205168 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
8 Hb_000020_050 0.0919135907 - - PREDICTED: expansin-A6 [Jatropha curcas]
9 Hb_025787_020 0.0939912054 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
10 Hb_006810_040 0.0951053895 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_001971_040 0.0956841071 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
12 Hb_000162_190 0.0978841975 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_000310_110 0.0978949129 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
14 Hb_004055_090 0.1059508717 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
15 Hb_000375_260 0.1072156973 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
16 Hb_043552_010 0.1080615427 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
17 Hb_006693_010 0.1086420458 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
18 Hb_000359_100 0.1118603082 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000187_050 0.1121789628 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
20 Hb_005181_170 0.1154082037 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_230 Hb_000345_230 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_003935_040 Hb_003935_040 Hb_000345_230--Hb_003935_040 Hb_009252_080 Hb_009252_080 Hb_000345_230--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000345_230--Hb_001141_440 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160 Hb_005332_030 Hb_005332_030 Hb_159809_040--Hb_005332_030 Hb_006810_040 Hb_006810_040 Hb_159809_040--Hb_006810_040 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_159809_040--Hb_000522_160 Hb_000977_190 Hb_000977_190 Hb_159809_040--Hb_000977_190 Hb_000162_190 Hb_000162_190 Hb_003935_040--Hb_000162_190 Hb_000310_110 Hb_000310_110 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100 Hb_043552_010 Hb_043552_010 Hb_009252_080--Hb_043552_010 Hb_009252_080--Hb_001709_090 Hb_025787_020 Hb_025787_020 Hb_009252_080--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_009252_080--Hb_001056_040 Hb_009252_080--Hb_000162_190 Hb_000853_250 Hb_000853_250 Hb_001141_440--Hb_000853_250 Hb_001141_440--Hb_000162_190 Hb_001971_040 Hb_001971_040 Hb_001141_440--Hb_001971_040 Hb_000062_280 Hb_000062_280 Hb_001141_440--Hb_000062_280 Hb_001141_440--Hb_009252_080 Hb_001709_090--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_001709_090--Hb_000375_260 Hb_001709_090--Hb_001056_040 Hb_002028_270 Hb_002028_270 Hb_001709_090--Hb_002028_270 Hb_000522_160--Hb_006810_040 Hb_006693_010 Hb_006693_010 Hb_000522_160--Hb_006693_010 Hb_000522_160--Hb_005332_030 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0541006 1.02976 9.87073 13.1501 0 0.114006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.35966 2.41456

CAGE analysis