Hb_025787_020

Information

Type -
Description -
Location Contig25787: 20709-23033
Sequence    

Annotation

kegg
ID cic:CICLE_v10030764mg
description hypothetical protein
nr
ID XP_012087737.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067JKU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26780: 23418-24091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025787_020 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
2 Hb_009252_080 0.0762403324 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
3 Hb_001140_300 0.0765332035 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
4 Hb_000162_190 0.0791731698 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_001056_040 0.0881896182 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
6 Hb_000345_230 0.0939912054 - - -
7 Hb_001709_090 0.0964561072 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
8 Hb_000735_020 0.0970975521 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_003935_040 0.0998563973 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
10 Hb_033312_070 0.1064112014 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
11 Hb_000112_080 0.1067695216 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
12 Hb_000853_250 0.1071302244 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
13 Hb_001141_440 0.1081372398 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
14 Hb_012518_080 0.1083088627 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
15 Hb_015934_080 0.1093643803 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
16 Hb_002902_060 0.1102331005 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
17 Hb_000017_250 0.1109715618 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
18 Hb_000020_050 0.1113118025 - - PREDICTED: expansin-A6 [Jatropha curcas]
19 Hb_010962_020 0.1146172896 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
20 Hb_000003_750 0.1150068991 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_025787_020 Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_025787_020--Hb_009252_080 Hb_001140_300 Hb_001140_300 Hb_025787_020--Hb_001140_300 Hb_000162_190 Hb_000162_190 Hb_025787_020--Hb_000162_190 Hb_001056_040 Hb_001056_040 Hb_025787_020--Hb_001056_040 Hb_000345_230 Hb_000345_230 Hb_025787_020--Hb_000345_230 Hb_001709_090 Hb_001709_090 Hb_025787_020--Hb_001709_090 Hb_043552_010 Hb_043552_010 Hb_009252_080--Hb_043552_010 Hb_009252_080--Hb_001709_090 Hb_009252_080--Hb_001056_040 Hb_009252_080--Hb_000162_190 Hb_009252_080--Hb_000345_230 Hb_007218_040 Hb_007218_040 Hb_001140_300--Hb_007218_040 Hb_001140_300--Hb_001056_040 Hb_007632_070 Hb_007632_070 Hb_001140_300--Hb_007632_070 Hb_005181_170 Hb_005181_170 Hb_001140_300--Hb_005181_170 Hb_001396_030 Hb_001396_030 Hb_001140_300--Hb_001396_030 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_174639_010 Hb_174639_010 Hb_001056_040--Hb_174639_010 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001056_040--Hb_001709_090 Hb_001709_120 Hb_001709_120 Hb_001056_040--Hb_001709_120 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_000345_230--Hb_003935_040 Hb_000345_230--Hb_001141_440 Hb_000345_230--Hb_001709_090 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160 Hb_001709_090--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_001709_090--Hb_000375_260 Hb_002028_270 Hb_002028_270 Hb_001709_090--Hb_002028_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0589514 0.793415 7.35187 14.3538 0.0157656 0.0539808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150461 0 1.78149 3.25659

CAGE analysis